On 27 September 2017 at 22:49, Juha Sointusalo <juha.sointus...@gmail.com> wrote:
> I installed 7.8.2 a few minutes ago to make sure I can see the bug with > that version. It will take about one hour to get results. > Yep, it's the bug in 7.8.2. A Rosetta task exits and client tries to clean the slot directory: 27-Sep-2017 22:50:15 [---] [slot] cleaning out slots/5: handle_exited_app() 27-Sep-2017 22:50:15 [---] [slot] removed file slots/5/boinc_checkpoint_count.txt ... 27-Sep-2017 22:50:17 [---] [slot] failed to remove file slots/5/stderrgfx.txt: Error 32 27-Sep-2017 22:50:17 [---] [slot] removed file slots/5/stdout.txt 27-Sep-2017 22:50:17 [---] [slot] removed file slots/5/t000_.200.3mers.gz 27-Sep-2017 22:50:17 [---] [slot] removed file slots/5/t000_.200.9mers.gz 27-Sep-2017 22:50:17 [---] [slot] removed file slots/5/t000_.fasta 27-Sep-2017 22:50:17 [Rosetta@home] Computation for task rb_09_27_71535_120475__t000__ab_robetta_IGNORE_THE_REST_516294_956_0 finished Starting a new task in slot 5 even though it wasn't clean: 27-Sep-2017 22:50:17 [Rosetta@home] [slot] assigning slot 5 to tj_9_24_juncA_X_1na0A_DHR54_l2_t3_t3_fragments_abinitio_SAVE_ALL_OUT_515776_399_0 27-Sep-2017 22:50:19 [---] [slot] removed file slots/5/init_data.xml 27-Sep-2017 22:50:19 [Rosetta@home] setup_file: projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_windows_x86_64.exe (input) ... 27-Sep-2017 22:50:19 [Rosetta@home] [cpu_sched] Restarting task tj_9_24_juncA_X_1na0A_DHR54_l2_t3_t3_fragments_abinitio_SAVE_ALL_OUT_515776_399_0 using minirosetta version 373 in slot 5 27-Sep-2017 22:50:20 [Rosetta@home] [sched_op] Reason: Unrecoverable error for task tj_9_24_juncA_X_1na0A_DHR54_l2_t3_t3_fragments_abinitio_SAVE_ALL_OUT_515776_399_0 27-Sep-2017 22:50:20 [---] [slot] cleaning out slots/5: handle_exited_app() 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/boinc_lockfile 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/default.out.gz 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/graphics_app 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/Helvetica.txf 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/init_data.xml 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/minirosetta_3.73_windows_x86_64.exe 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/minirosetta_database.zip 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/stderr.txt 27-Sep-2017 22:50:20 [---] [slot] failed to remove file slots/5/stderrgfx.txt: Error 32 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/stdout.txt 27-Sep-2017 22:50:20 [---] [slot] removed file slots/5/tj_9_24_juncA_X_1na0A_DHR54_l2_t3_t3_fragments_fold_data.zip 27-Sep-2017 22:50:20 [Rosetta@home] Computation for task tj_9_24_juncA_X_1na0A_DHR54_l2_t3_t3_fragments_abinitio_SAVE_ALL_OUT_515776_399_0 finished 27-Sep-2017 22:50:20 [Rosetta@home] Output file tj_9_24_juncA_X_1na0A_DHR54_l2_t3_t3_fragments_abinitio_SAVE_ALL_OUT_515776_399_0_r2138012187_0 for task tj_9_24_juncA_X_1na0A_DHR54_l2_t3_t3_fragments_abinitio_SAVE_ALL_OUT_515776_399_0 absent Starting one more task, still using slot 5: 27-Sep-2017 22:50:20 [Rosetta@home] [slot] assigning slot 5 to ProBinder_S_15_fragments_fold_SAVE_ALL_OUT_516202_914_0 27-Sep-2017 22:50:22 [---] [slot] removed file slots/5/init_data.xml 27-Sep-2017 22:50:22 [Rosetta@home] setup_file: projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_windows_intelx86.exe (input) ... 27-Sep-2017 22:50:22 [Rosetta@home] [cpu_sched] Restarting task ProBinder_S_15_fragments_fold_SAVE_ALL_OUT_516202_914_0 using minirosetta version 373 in slot 5 27-Sep-2017 22:50:23 [Rosetta@home] [sched_op] Deferring communication for 00:03:49 27-Sep-2017 22:50:23 [Rosetta@home] [sched_op] Reason: Unrecoverable error for task ProBinder_S_15_fragments_fold_SAVE_ALL_OUT_516202_914_0 27-Sep-2017 22:50:23 [---] [slot] cleaning out slots/5: handle_exited_app() 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/boinc_lockfile 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/default.out.gz 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/graphics_app 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/Helvetica.txf 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/init_data.xml 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/minirosetta_3.73_windows_intelx86.exe 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/minirosetta_database.zip 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/ProBinder_S_15_fragments_data.zip 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/stderr.txt 27-Sep-2017 22:50:23 [---] [slot] failed to remove file slots/5/stderrgfx.txt: Error 32 27-Sep-2017 22:50:23 [---] [slot] removed file slots/5/stdout.txt 27-Sep-2017 22:50:23 [Rosetta@home] Computation for task ProBinder_S_15_fragments_fold_SAVE_ALL_OUT_516202_914_0 finished 27-Sep-2017 22:50:23 [Rosetta@home] Output file ProBinder_S_15_fragments_fold_SAVE_ALL_OUT_516202_914_0_r907963939_0 for task ProBinder_S_15_fragments_fold_SAVE_ALL_OUT_516202_914_0 absent Fortunately that's all I had cached. In working client this is how it looks like: A Rosetta task exits and client tries to clean the slot: 27-Sep-2017 20:53:01 [---] [slot] cleaning out slots/5: handle_exited_app() 27-Sep-2017 20:53:01 [---] [slot] removed file slots/5/00001.200.3mers 27-Sep-2017 20:53:01 [---] [slot] removed file slots/5/00001.200.9mers 27-Sep-2017 20:53:01 [---] [slot] removed file slots/5/00001.pdb 27-Sep-2017 20:53:01 [---] [slot] removed file slots/5/boinc_checkpoint_count.txt 27-Sep-2017 20:53:01 [---] [slot] removed file slots/5/boinc_finish_called ... 27-Sep-2017 20:53:03 [---] [slot] removed file slots/5/stderr.txt 27-Sep-2017 20:53:03 [---] [slot] failed to remove file slots/5/stderrgfx.txt: Error 32 27-Sep-2017 20:53:03 [---] [slot] removed file slots/5/stdout.txt 27-Sep-2017 20:53:03 [Rosetta@home] Computation for task ProBinder_S_526_fragments_fold_SAVE_ALL_OUT_516241_807_0 finished The client goes on to start a new task. Slot 5 is the first unused: 27-Sep-2017 20:53:03 [---] [slot] cleaning out slots/5: get_free_slot() 27-Sep-2017 20:53:03 [---] [slot] failed to remove file slots/5/stderrgfx.txt: Error 32 27-Sep-2017 20:53:03 [Rosetta@home] [slot] failed to clean out dir: unlink() failed The client couldn't clean slot 5 and tries the next free slot which in this case is slot 7: 27-Sep-2017 20:53:03 [---] [slot] cleaning out slots/7: get_free_slot() 27-Sep-2017 20:53:03 [Rosetta@home] [slot] assigning slot 7 to rb_09_27_71504_120474__t000__ab_robetta_IGNORE_THE_REST_516293_2819_1 27-Sep-2017 20:53:04 [---] [slot] removed file slots/7/init_data.xml 27-Sep-2017 20:53:04 [Rosetta@home] setup_file: projects/boinc.bakerlab.org_rosetta/minirosetta_3.73_windows_x86_64.exe (input) ... 27-Sep-2017 20:53:04 [Rosetta@home] Starting task rb_09_27_71504_120474__t000__ab_robetta_IGNORE_THE_REST_516293_2819_1 27-Sep-2017 20:53:04 [Rosetta@home] [cpu_sched] Starting task rb_09_27_71504_120474__t000__ab_robetta_IGNORE_THE_REST_516293_2819_1 using minirosetta version 373 in slot 7 And everything works right. -Juha _______________________________________________ boinc_dev mailing list boinc_dev@ssl.berkeley.edu https://lists.ssl.berkeley.edu/mailman/listinfo/boinc_dev To unsubscribe, visit the above URL and (near bottom of page) enter your email address.
