And here's a fix for `bongo-kill-region'.
--- bongo-new/bongo.el 2007-01-10 15:12:04.000000000 +0100
+++ bongo-newer/bongo.el 2007-01-10 15:44:24.000000000 +0100
@@ -6918,8 +6918,12 @@
(setq end (move-marker (make-marker) end))
(save-excursion
(goto-char beg)
- (while (progn (bongo-kill-line)
- (< (point) end))
+ (while (progn
+ (when (bongo-marked-track-line-p)
+ (bongo-set-mark 'unset))
+ (let ((bongo-marks nil))
+ (bongo-kill-line))
+ (< (point) end))
(append-next-kill)))
(move-marker end nil))
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