Hi Rishi,
You might try feeding it the identity affine transform, i.e.:
1 0 0 0
0 1 0 0
0 0 1 0
0 0 0 1
To be completely honest, not many people use the AFNI-caret linkage
anymore. They either view volume(s) and surface together in Caret, or
they view their Caret-generated surfaces with SUMA, whose AFNI
integration is more seamless than Caret's. I don't consider this a
problem as much as a consequence of how Caret and SUMA have evolved over
the last couple of years. It's only a problem if users' needs don't get
met by either package.
You know you can view your functional volume overlaid with your anatomy
in Caret, right? You might have a look at the PALS tutorial, just so
you can get up-to-speed with the latest enhancements. I know you've
been using SureFit/Caret for a few years now, but much has changed in
the last year or so.
Donna
On 11/07/2005 01:52 PM, Rishi Kalwani wrote:
Hi,
So...the volume and the surface both have their center (origin) at the
anterior commisure....but when i try to connect to AFNI it asks for a
Transformation Matrix file. I tried to make transformation matrix
files, but wasn't sure what to do.
Do I have to make a matrix file for both the Volume and the Surface?
Since they both have their origins at the AC, do i need to specify
different values for the Matrix or Transform Views?
Is it a problem that the surface was made using SureFit, rather than
caret5?
thanks
rishi
_______________________________________________
caret-users mailing list
caret-users@brainvis.wustl.edu
http://pulvinar.wustl.edu/mailman/listinfo/caret-users
