Hi Donna,
I have tried to use File: Open Volume Anatomy and Open Volume Functional on:
image.hdr
image.HEAD
image.nii
as you suggested, but unfortunately they all cause the X session to crash.
Thank you for you help!
Best,
Marco
Donna Dierker wrote:
Marco,
Does the problem occur when you use File: Open Volume Anatomy (or
functional) File to open the same file?
If so, does it occur if you convert the file to NIfTI and/or AFNI? I'm
guessing it will (e.g., suggesting a display issue, rather than a file
I/O issue), but it helps to be sure. If you have trouble converting to
another file format, then upload the file here, and I'll provide you the
converted version:
http://pulvinar.wustl.edu/cgi-bin/upload.cgi
On 11/30/2006 04:08 AM, marco tettamanti wrote:
Hi John and Donna,
I tried both of your methods, but unfortunately none solved my problem...
I have tried to rename the file .fonts.conf, alone and, following the
thread between Roland and you, together with .fonts.cache-1 and
.fontconfig/
I also tried running Donna's script sh ./caret_prefs_stripper.sh.
Helas, my entire X session always crashes when I import an Analyze
image file.
My problem seem to be different form Roland's and Veronica's ones, in
that the problem is not "limited" to Caret, but it affects the entire
X environment.
Best,
Marco
John Harwell wrote:
Marco,
Another user had a problem similar to this. I believe it has to do
with the FreeType library which gets used to create text characters
that are drawn on the volume slices to show the voxel and its
stereotaxic coordinate.
See if there is a file in your home directory named ".fonts.conf"
(note that the file begins with a period so use the command "ls -a"
to see the file). If ".fonts.conf" exists, rename it, start Caret,
and see if you can import a volume.
For more info:
http://www.mail-archive.com/caret-users@brainvis.wustl.edu/msg00892.html
----------------------------------------------------------
John Harwell
[EMAIL PROTECTED]
314-362-3467
Department of Anatomy and Neurobiology
Washington University School of Medicine
660 S. Euclid Ave. Box 8108
St. Louis, MO 63110 USA
On Nov 29, 2006, at 10:42 AM, marco tettamanti wrote:
Hi Donna and Hohn,
I am experiencing a severe problem with my caret installation in
linux: whenever I try to import an Analyze Volume file, my entire X
session immediately crashes, including all applications and I have
to login in KDE from scratch.
I couldn't tell whether the problem is limited to the Import
function only, because the system crashes so badly that I thought it
would be better to obtain some feedback from you before doing some
debugging. But all the other display functions of caret that I have
tried out (rendering surfaces, overlaying metric maps and so on)
seem to work fine.
I first encountered the problem a few days ago. I completely ignore
what could be the origin of the problem. I had used the same
installation without any problems before, including the Import
function. I have also tried to do a fresh install, of both versions
5.4 and 5.5, but the problem persists.
I did some updates of KDE and xorg recently, though, and I suspect
that the problem may have arosen since then. All other applications
run fine, though.
Also, I have installed the same .zip caret tar ball on another
machine and there it runs fine...
This is the kernel of my machine:
Linux bll4 2.6.11-kanotix-11 #1 Sun May 29 22:32:10 CEST 2005 i686
GNU/Linux
Any help would be greatly appreciated!
Best,
Marco
--Marco Tettamanti, Ph.D.
San Raffaele Scientific Institute
Facoltà di Psicologia
Via Olgettina 58
I-20132 Milano, Italy
Tel. ++39-02-26434888
Fax ++39-02-26434892
Email: [EMAIL PROTECTED]
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_______________________________________________
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--
Marco Tettamanti, Ph.D.
San Raffaele Scientific Institute
Facoltà di Psicologia
Via Olgettina 58
I-20132 Milano, Italy
Tel. ++39-02-26434888
Fax ++39-02-26434892
Email: [EMAIL PROTECTED]
