Alex, Can you upload the foci file (or fociproj) here:
http://pulvinar.wustl.edu/cgi-bin/upload.cgi To project them to the PALS atlas (as opposed to your own subject's surface), Caret does need to know which of the surfaces in the Caret data_files/fmri_mapping_files directory represents the best fit: Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_711-2C.clean.align.73730.coord Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_AFNI.clean.73730.coord Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_FLIRT.clean.73730.coord Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_MRITOTAL.clean.73730.coord Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM2.clean.73730.coord Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM5.clean.73730.coord Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM95.clean.73730.coord Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM96.clean.73730.coord Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM99.clean.73730.coord Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_711-2C.clean.align.73730.coord Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_AFNI.clean.73730.coord Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_FLIRT.clean.73730.coord Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_MRITOTAL.clean.73730.coord Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM2.clean.73730.coord Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM5.clean.73730.coord Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM95.clean.73730.coord Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM96.clean.73730.coord Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM99.clean.73730.coord I'm pretty sure this is an entry on the Map stereotaxic focus dialog, but there are many fields on that dialog. So you're in Cambridge now, eh? Weren't you in Melbourne a while back? Donna On 01/14/2009 03:48 PM, Alex Fornito wrote: > Hi, > I entered a few stereotactic foci manually and saved the .foci, .fociproj, > and .focicolor files. > When I opened Caret up again and re-loaded the spec file, I was unable to > view the foci on the surface. I can see them in the foci windows of the > display control, but if I select Layers > foci > Foci projection to PALS > atlas, I get a message saying "These foci do not have associated stereotaxic > spaces: ..." > I was wondering whether it is possible to visualize the foci again, without > entering them all again. > > Thanks, > Alex > > > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users > _______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
