Hi Alex, A quick look at your fociproj makes it clear that the foci are still there; they haven't disappeared. So the only question is how to tell Caret what the stereotaxic space is. David has requested I coordinate with him on it when he gets in. Stay tuned...
Donna On 01/14/2009 04:12 PM, Alex Fornito wrote: > Hi, > Yeah, in Cambridge on a post-doc fellowship. > I've uploaded the file. > There seems to be a an option to set the space on the 'Studies' tab of the > map stereotaxtic focus window, but I couldn't quite figure out it works. > Thanks for your help, > A > > > On 14/01/2009 21:56, "Donna Dierker" <do...@brainvis.wustl.edu> wrote: > > >> Alex, >> >> Can you upload the foci file (or fociproj) here: >> >> http://pulvinar.wustl.edu/cgi-bin/upload.cgi >> >> To project them to the PALS atlas (as opposed to your own subject's >> surface), Caret does need to know which of the surfaces in the Caret >> data_files/fmri_mapping_files directory represents the best fit: >> >> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_711-2C.clean.align.73730.coord >> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_AFNI.clean.73730.coord >> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_FLIRT.clean.73730.coord >> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_MRITOTAL.clean.73730.coord >> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM2.clean.73730.coord >> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM5.clean.73730.coord >> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM95.clean.73730.coord >> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM96.clean.73730.coord >> Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM99.clean.73730.coord >> Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_711-2C.clean.align.73730.coord >> Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_AFNI.clean.73730.coord >> Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_FLIRT.clean.73730.coord >> Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_MRITOTAL.clean.73730.coord >> Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM2.clean.73730.coord >> Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM5.clean.73730.coord >> Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM95.clean.73730.coord >> Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM96.clean.73730.coord >> Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM99.clean.73730.coord >> >> I'm pretty sure this is an entry on the Map stereotaxic focus dialog, >> but there are many fields on that dialog. >> >> So you're in Cambridge now, eh? Weren't you in Melbourne a while back? >> >> Donna >> >> On 01/14/2009 03:48 PM, Alex Fornito wrote: >> >>> Hi, >>> I entered a few stereotactic foci manually and saved the .foci, .fociproj, >>> and .focicolor files. >>> When I opened Caret up again and re-loaded the spec file, I was unable to >>> view the foci on the surface. I can see them in the foci windows of the >>> display control, but if I select Layers > foci > Foci projection to PALS >>> atlas, I get a message saying "These foci do not have associated stereotaxic >>> spaces: ..." >>> I was wondering whether it is possible to visualize the foci again, without >>> entering them all again. >>> >>> Thanks, >>> Alex >>> >>> >>> >>> _______________________________________________ >>> caret-users mailing list >>> caret-users@brainvis.wustl.edu >>> http://brainvis.wustl.edu/mailman/listinfo/caret-users >>> >>> >> _______________________________________________ >> caret-users mailing list >> caret-users@brainvis.wustl.edu >> http://brainvis.wustl.edu/mailman/listinfo/caret-users >> > > _______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
