Hi, Yeah, in Cambridge on a post-doc fellowship. I've uploaded the file. There seems to be a an option to set the space on the 'Studies' tab of the map stereotaxtic focus window, but I couldn't quite figure out it works. Thanks for your help, A
On 14/01/2009 21:56, "Donna Dierker" <do...@brainvis.wustl.edu> wrote: > Alex, > > Can you upload the foci file (or fociproj) here: > > http://pulvinar.wustl.edu/cgi-bin/upload.cgi > > To project them to the PALS atlas (as opposed to your own subject's > surface), Caret does need to know which of the surfaces in the Caret > data_files/fmri_mapping_files directory represents the best fit: > > Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_711-2C.clean.align.73730.coord > Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_AFNI.clean.73730.coord > Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_FLIRT.clean.73730.coord > Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_MRITOTAL.clean.73730.coord > Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM2.clean.73730.coord > Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM5.clean.73730.coord > Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM95.clean.73730.coord > Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM96.clean.73730.coord > Human.PALS_B12.LEFT_AVG_B1-12.FIDUCIAL_SPM99.clean.73730.coord > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_711-2C.clean.align.73730.coord > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_AFNI.clean.73730.coord > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_FLIRT.clean.73730.coord > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_MRITOTAL.clean.73730.coord > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM2.clean.73730.coord > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM5.clean.73730.coord > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM95.clean.73730.coord > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM96.clean.73730.coord > Human.PALS_B12.RIGHT_AVG_B1-12.FIDUCIAL_SPM99.clean.73730.coord > > I'm pretty sure this is an entry on the Map stereotaxic focus dialog, > but there are many fields on that dialog. > > So you're in Cambridge now, eh? Weren't you in Melbourne a while back? > > Donna > > On 01/14/2009 03:48 PM, Alex Fornito wrote: >> Hi, >> I entered a few stereotactic foci manually and saved the .foci, .fociproj, >> and .focicolor files. >> When I opened Caret up again and re-loaded the spec file, I was unable to >> view the foci on the surface. I can see them in the foci windows of the >> display control, but if I select Layers > foci > Foci projection to PALS >> atlas, I get a message saying "These foci do not have associated stereotaxic >> spaces: ..." >> I was wondering whether it is possible to visualize the foci again, without >> entering them all again. >> >> Thanks, >> Alex >> >> >> >> _______________________________________________ >> caret-users mailing list >> caret-users@brainvis.wustl.edu >> http://brainvis.wustl.edu/mailman/listinfo/caret-users >> > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users -- Alex Fornito CJ Martin Post-Doctoral Fellow Brain Mapping Unit Department of Psychiatry University of Cambridge Downing Site Downing St, Cambridge UK CB2 3EB Email: af...@cam.ac.uk Phone: +44 (0) 1223 764670 Fax: +44 (0) 1223 336581 Australian Details: Melbourne Neuropsychiatry Centre National Neuroscience Facility Levels 1 & 2, Alan Gilbert Building 161 Barry St Carlton South 3053 Victoria, Australia Email: forni...@unimelb.edu.au Phone: +61 3 8344 1861 Fax: +61 3 9348 0469 _______________________________________________ caret-users mailing list caret-users@brainvis.wustl.edu http://brainvis.wustl.edu/mailman/listinfo/caret-users
