Colin,
I believe you were trying to use the Freesurfer to Caret pipeline. If
you did, then you should have a surface in your PALS_B12.LR directory
named like this:
deformed_deformed_Human.SAIS_169_MR1.R.Midthickness_711-2B.mws.73730.coord
deformed_Human.SAIS_166_MR1.R.73730.register.73730.deform_map
deformed_Human.SAIS_166_MR1.R.73730.register.73730.spec
deformed_Human.SAIS_166_MR1.R.Initial.73730.surface_shape
deformed_Human.SAIS_166_MR1.R.LANDMARKS.ekr.73730.borderproj
deformed_Human.SAIS_166_MR1.R.SPHERICAL.73730.MWS.SPHERE_CYCLE4.ALIGNED.73730.coord
deformed_Human.SAIS_169_MR1.L.73730.register.73730.deform_map
deformed_Human.SAIS_169_MR1.L.73730.register.73730.spec
deformed_Human.SAIS_169_MR1.L.Initial.73730.surface_shape
deformed_Human.SAIS_169_MR1.L.LANDMARKS.ekr.73730.borderproj
deformed_Human.SAIS_169_MR1.L.SPHERICAL.73730.MWS.SPHERE_CYCLE4.ALIGNED.73730.coord
deformed_Human.SAIS_169_MR1.R.73730.register.73730.deform_map
deformed_Human.SAIS_169_MR1.R.73730.register.73730.spec
deformed_Human.SAIS_169_MR1.R.Initial.73730.surface_shape
deformed_Human.SAIS_169_MR1.R.LANDMARKS.ekr.73730.borderproj
deformed_Human.SAIS_169_MR1.R.SPHERICAL.73730.MWS.SPHERE_CYCLE4.ALIGNED.73730.coord
These are all on the 73730 standard mesh. You must have run both
preborder.sh and postborder.sh for these to be there, though.
Donna
On 04/09/2011 10:25 PM, David Van Essen wrote:
> Colin,
>
> Segmentation produces a 'native mesh' whose exact node number cannot
> be prespecified in Caret (or in other segmentation algorithms I know
> about).
>
> The 73,730-node mesh ('74k' in our latest lingo) arises from
> surface-based registration to an atlas - either the macaque F99 atlas
> (a 74k_f99 mesh) or the human PALS-B12 atlas (a 74k_pals mesh) - using
> the appropriate tutorial.
>
> David VE
>
>
> On Apr 8, 2011, at 6:48 PM, Colin Davey wrote:
>
>> Hi,
>>
>> How do you create a 73,730 standard-mesh with Caret? I assume you
>> begin by going through segmentation, flattening and registration
>> process from the tutorial of the same name. But then what?
>>
>> Cheers,
>> - C
>>
>> ***************************************
>> Colin Davey
>> Scientist
>> Senior Software Engineer
>>
>> Electrical Geodesics, Inc.
>> 1600 Millrace Dr. St 307
>> Eugene, OR 97403
>>
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>> http://www.ColinDavey.com/BoogieWoogie
>> ***************************************
>>
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