Hi Donna, I have been trying to allocate more memory to caret_stats so it can run java properly without crashing. However, this has not worked. I just downloaded the JRE you provided, and it is actually the same one that I am using.
Do you think there is another source of this problem? Thank you, Eshita On Wed, Jan 15, 2014 at 7:23 PM, Donna Dierker <donna.dier...@sbcglobal.net>wrote: > At the end of the TFCE processing, you should get a text file named > something like *report.txt, along with a *ignif*metric. If you don't, then > it's not finishing normally. > > How many iterations are you using? If it doesn't finish overnight with 5k > iterations, then it might be your java runtime engine. Before I started > using this one, my java runtime engine just hung or grinded to a near halt > after a few thousand iterations: > > http://brainmap.wustl.edu/pub/donna/US/WVU/linux_java.zip > login pub > password download > > You can use others; just be aware that the JRE can be an obstacle. > > > On Jan 15, 2014, at 3:32 PM, Eshita Shah <eshs...@ucla.edu> wrote: > > > Hi Donna, > > > > I am running a script you sent me a while ago, which uses caret_stats to > run ANOVA and then TFCE for significant cluster analysis. I am noticing > that the output files generated after running the script do not match up to > the expected outputs. I am seeing files such as ".metric.data1", > ".metric.data2", etc. I'm not sure where they are coming from - my hunch is > that the script is being aborted at some point (because I am not getting > any of the TFCE outputs), but I'm not exactly sure why these files would be > generated or what they are. > > > > Please let me know if you have any ideas. > > > > Thank you, > > Eshita > > > > -- > > Eshita Shah > > University of California, Los Angeles | 2014 > > B.S. Neuroscience > > eshs...@ucla.edu > > > > > > _______________________________________________ > > caret-users mailing list > > caret-users@brainvis.wustl.edu > > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > caret-users@brainvis.wustl.edu > http://brainvis.wustl.edu/mailman/listinfo/caret-users >
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