How many iterations did you specify? Have you tried it with 1000 iterations?
On Jan 22, 2014, at 3:09 PM, Eshita Shah <[email protected]> wrote: > Hi Donna, > > I have been trying to allocate more memory to caret_stats so it can run java > properly without crashing. However, this has not worked. I just downloaded > the JRE you provided, and it is actually the same one that I am using. > > Do you think there is another source of this problem? > > Thank you, > Eshita > > > On Wed, Jan 15, 2014 at 7:23 PM, Donna Dierker <[email protected]> > wrote: > At the end of the TFCE processing, you should get a text file named something > like *report.txt, along with a *ignif*metric. If you don't, then it's not > finishing normally. > > How many iterations are you using? If it doesn't finish overnight with 5k > iterations, then it might be your java runtime engine. Before I started > using this one, my java runtime engine just hung or grinded to a near halt > after a few thousand iterations: > > http://brainmap.wustl.edu/pub/donna/US/WVU/linux_java.zip > login pub > password download > > You can use others; just be aware that the JRE can be an obstacle. > > > On Jan 15, 2014, at 3:32 PM, Eshita Shah <[email protected]> wrote: > > > Hi Donna, > > > > I am running a script you sent me a while ago, which uses caret_stats to > > run ANOVA and then TFCE for significant cluster analysis. I am noticing > > that the output files generated after running the script do not match up to > > the expected outputs. I am seeing files such as ".metric.data1", > > ".metric.data2", etc. I'm not sure where they are coming from - my hunch is > > that the script is being aborted at some point (because I am not getting > > any of the TFCE outputs), but I'm not exactly sure why these files would be > > generated or what they are. > > > > Please let me know if you have any ideas. > > > > Thank you, > > Eshita > > > > -- > > Eshita Shah > > University of California, Los Angeles | 2014 > > B.S. Neuroscience > > [email protected] > > > > > > _______________________________________________ > > caret-users mailing list > > [email protected] > > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
