Dear Donna, Colin, and David, Thank you all for the input. Turning off automatic error correction helped in significantly cutting off processing time. I managed to reconstruct with additional manual labour. It worked reasonably well. The topological errors were not that many, especially when we're only interested in a certain roi.
Thanks again everyone. Aditya David Van Essen <vanes...@wustl.edu> wrote: >Alternatively, you may find that FreeSurfer will work better for your current >needs. Matt Glasser and others have gotten it to work reasonably well on >macaque structural images. > >David > >On Oct 15, 2014, at 2:38 AM, Donna Dierker <do...@brainvis.wustl.edu> wrote: > >> Hi Aditya, >> >> On monkeys, yes. Humans, no. The SureFit algorithm that is in Caret's >> segmentation feature was designed for cubic 1mm human data. It worked >> reasonably well on higher res monkey data, but some of the subroutines will >> likely break on higher res human data (e.g., disconnecting eye, skull, >> hindbrain). >> >> I'd turn all error correction features off and sanity check the initial >> segmentation. If the skull, eye, or hindbrain is still connected, then >> resolving that issue should precede the error correction steps. >> Unfortunately, that will likely take some work. >> >> Donna >> >> >> On Oct 14, 2014, at 5:25 AM, "Dr. Aditya Tri Hernowo, Ph.D" >> <adityatrihern...@gmail.com> wrote: >> >>> Dear users & experts, >>> >>> Does anyone have any experience with reconstructing the cortex on 0.5mm >>> resolution T1 images? I am still having problems with the very long time it >>> takes to perform automatic error correction (more than 3 hours before the >>> software finally crashed). >>> >>> Regards, >>> >>> Aditya Hernowo >>> >>> _______________________________________________ >>> caret-users mailing list >>> firstname.lastname@example.org >>> http://brainvis.wustl.edu/mailman/listinfo/caret-users >> >> >> _______________________________________________ >> caret-users mailing list >> email@example.com >> http://brainvis.wustl.edu/mailman/listinfo/caret-users > > >_______________________________________________ >caret-users mailing list >firstname.lastname@example.org >http://brainvis.wustl.edu/mailman/listinfo/caret-users _______________________________________________ caret-users mailing list email@example.com http://brainvis.wustl.edu/mailman/listinfo/caret-users