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Use this AWK script
$3=="N" {print}
$3=="CA" {print}
$3=="CB" {print}
$3=="C" {print}
$3=="O" {print}
command
nawk -f polyala.awk *.pdb > *.pdb
Good luck
Anthony
________________________________
Anthony Addlagatta, PhD
HHMI Research Associate
Institute of Molecular Biology
University of Oregon
Eugene, OR-97403
Phone: (541) 346-5867
Fax: (541)346-5270
Web: http://darkwing.uoregon.edu/~anthony
On Aug 8, 2006, at 10:41 AM, W.M. B. wrote:
Hello
Would anyone tell me how to generate a polyalanine model from pdb
file for MR.
Thanks
Peter
