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You can do the same in pymol using the 'cartoon putty' command. See http://www.pymolwiki.org/index.php/Cartoon for more info. Cheers, Stephen On 8/15/06, P Hubbard <[EMAIL PROTECTED]> wrote:
*** For details on how to be removed from this list visit the *** *** CCP4 home page http://www.ccp4.ac.uk *** Thanks to James Irving; it's Molmol. http://hugin.ethz.ch/wuthrich/software/molmol/ >From: "P Hubbard" <[EMAIL PROTECTED]> >To: [email protected] >Subject: [ccp4bb]: Cutomizing tube width in figures >Date: Tue, 15 Aug 2006 12:19:50 -0700 > >*** For details on how to be removed from this list visit the *** >*** CCP4 home page http://www.ccp4.ac.uk *** > > >Hi all, > >Sorry for another one of those non-CCP4 questions, but I'm sure other >people might find the answer useful..... > >I have two structures of a protein in two different conformations, showing >large differences in a number of loops. I have used LSQMAN to do linear >interpolation betweeRegardsn the two states, and have placed corresponding CA-CA >distances into the B-factor column of the PDB file. My question is: > >I know I can use molscript to color a ribbon diagram according to B-factor >(and hence CA-CA distance), but is there a way to adjust the coilradius >parameter in a similar manner (with regions showing high variance having >fatter tube radii than those with low variance). The answer is yes! I've >seen this at a seminar a while ago, but never got the answer. > >Any help is much appreciated. > >Many thanks! > >
-- Dr Stephen Graham Division of Structural Biology Wellcome Trust Centre for Human Genetics Roosevelt Drive Oxford OX3 7BN United Kingdom Phone: +44 1865 287 549
