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I think you can do this in molscript, too.
set colourparts on;
set residuecolour residue-selection b-factor number number colour-ramp
Should do this with the coil command.
Tim
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Don't read any sky-writing for the next two weeks.
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Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Tue, 15 Aug 2006, P Hubbard wrote:
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> *** CCP4 home page http://www.ccp4.ac.uk ***
>
>
> Thanks to James Irving; it's Molmol.
>
> http://hugin.ethz.ch/wuthrich/software/molmol/
>
>
> >From: "P Hubbard" <[EMAIL PROTECTED]>
> >To: [email protected]
> >Subject: [ccp4bb]: Cutomizing tube width in figures
> >Date: Tue, 15 Aug 2006 12:19:50 -0700
> >
> >*** For details on how to be removed from this list visit the ***
> >*** CCP4 home page http://www.ccp4.ac.uk ***
> >
> >
> >Hi all,
> >
> >Sorry for another one of those non-CCP4 questions, but I'm sure other
> >people might find the answer useful.....
> >
> >I have two structures of a protein in two different conformations, showing
> >large differences in a number of loops. I have used LSQMAN to do linear
> >interpolation between the two states, and have placed corresponding CA-CA
> >distances into the B-factor column of the PDB file. My question is:
> >
> >I know I can use molscript to color a ribbon diagram according to B-factor
> >(and hence CA-CA distance), but is there a way to adjust the coilradius
> >parameter in a similar manner (with regions showing high variance having
> >fatter tube radii than those with low variance). The answer is yes! I've
> >seen this at a seminar a while ago, but never got the answer.
> >
> >Any help is much appreciated.
> >
> >Many thanks!
> >
> >
>
>
