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Thanks to James Irving; it's Molmol.
http://hugin.ethz.ch/wuthrich/software/molmol/
From: "P Hubbard" <[EMAIL PROTECTED]>
To: [email protected]
Subject: [ccp4bb]: Cutomizing tube width in figures
Date: Tue, 15 Aug 2006 12:19:50 -0700
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Hi all,
Sorry for another one of those non-CCP4 questions, but I'm sure other
people might find the answer useful.....
I have two structures of a protein in two different conformations, showing
large differences in a number of loops. I have used LSQMAN to do linear
interpolation between the two states, and have placed corresponding CA-CA
distances into the B-factor column of the PDB file. My question is:
I know I can use molscript to color a ribbon diagram according to B-factor
(and hence CA-CA distance), but is there a way to adjust the coilradius
parameter in a similar manner (with regions showing high variance having
fatter tube radii than those with low variance). The answer is yes! I've
seen this at a seminar a while ago, but never got the answer.
Any help is much appreciated.
Many thanks!
