[ccp4bb]: mrbump problems

[Matthew Wilce]

Dear CCP4, when trying to run mrbump I get the errors pasted below. I am running CCP4 V6.0 under OSX (intel) and have just installed the lastest mrbump. Could these errors be caused by the firewall at my institution? Is there a way around this? Thanks in advance, Matt Database update: Checking the web to see if newer versions of the search databases exist. *************************************************************************** * Information from CCP4Interface script *************************************************************************** The program run with command: python -u /sw/share/xtal/ccp4-6.0/bin/mrbump HKLIN /Volumes/G2F8/est/data/master1.mtz SEQIN /Volumes/G2F8/est/phasing/est.pir HKLOUT /Volumes/G2 F8/est/mrbump/master1_mrbump_soln1.mtz XYZOUT /Volumes/G2F8/est/mrbump/master1_mrbump_soln1.pdb has failed with error message Traceback (most recent call last):   File "/sw/share/xtal/ccp4-6.0/bin/mrbump", line 49, in ?     init.mrbump_initialisation(sys.argv)   File "/sw/share/xtal/ccp4-6.0/src/mrbump/include/initialisation/MRBUMP_initialise.py", line 232, in mrbump_initialisation     self.db_tools.test_databases(self.environment, self.keywords.UPDATE)   File "/sw/share/xtal/ccp4-6.0/src/mrbump/include/initialisation/MRBUMP_update_DB.py", line 68, in test_databases     self.update_DB('Fasta DB', 'http://www.ccp4.ac.uk/ronan/bmp_data/pdb_ATOMseqs.txt', environment.SETUP_DIR + '/pdb_ATOMseqs.txt')   File "/sw/share/xtal/ccp4-6.0/src/mrbump/include/initialisation/MRBUMP_update_DB.py", line 84, in update_DB     u=urllib.urlopen(url)   File "/sw/lib/python2.4/urllib.py", line 77, in urlopen     return opener.open(url)   File "/sw/lib/python2.4/urllib.py", line 185, in open     return getattr(self, name)(url)   File "/sw/lib/python2.4/urllib.py", line 308, in open_http     h.endheaders()   File "/sw/lib/python2.4/httplib.py", line 795, in endheaders     self._send_output()   File "/sw/lib/python2.4/httplib.py", line 676, in _send_output     self.send(msg)   File "/sw/lib/python2.4/httplib.py", line 643, in send     self.connect()   File "/sw/lib/python2.4/httplib.py", line 611, in connect     socket.SOCK_STREAM): IOError: [Errno socket error] (7, 'No address associated with nodename') *************************************************************************** Associate Professor Matthew Wilce Department of Biochemistry and Molecular Biology Monash University Victoria, Australia Phone: 613 9905 1086