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*** CCP4 home page http://www.ccp4.ac.uk ***
The error:
"cif_data_io.cpp:54:29: error: mmdb/mmdb_mmcif.h: No such file or directory"
tells you that MMDB_CXXFLAGS should point to a sub-directory of the
include file directory called "mmdb".
In my CCP4-6.0.1, mmdb_mmcif.h is in:
/usr/local/pxsoft/CCP4-6.0.1/includes/mmdb/mmdb_mmcif.h
..so I would set MMDB_CXXFLAGS to "-I/usr/local/pxsoft/CCP4-6.0.1/includes"
Mark
FYI. The "-I" follwed by the directory is indicating to the compiler
where the necessary include files reside.
On 13/12/06, Kerr, Iain <[EMAIL PROTECTED]> wrote:
Ok the following runs for configure:
./configure --with-ccp4=/usr/local/Xray_Programs/CCP4/ccp4-6.0.1/
CCP4_LIBS="-L/usr/local/Xray_programs/CCP4/ccp4-6.0.1/lib/"
CCP4_CXXFLAGS="-I/usr/local/Xray_programs/CCP4/ccp4-6.0.1/include/ccp4"
--with-mmdb=/usr/local/lib
MMDB_LIBS="-L/usr/local/lib -lmmdb"
MMDB_CXXFLAGS="-I/usr/local/lib"
--with-fftw=/usr/local/lib
FFTW_LIBS="-L/usr/local/lib -lrfftw -lfftw"
FFTW_CXXFLAGS="-I/usr/local/lib"
--enable-mmdb --enable-mtz --enable-cif --enable-mmdbold --enable-minimol
--enable-phs --enable-ccp4
Configuration Summary
------------------------------
core: yes
contrib: yes
phs: yes
cns: yes
mmdb: yes
mmdbold: yes
minimol: yes
cif: yes
ccp4: yes
cctbx: no
fortran: no
during "make check" I get the error (last line):
make[2]: Leaving directory
`/usr/local/Xray_Programs/CCP4/ccp4-onlylibs-dev/lib/clipper/clipper/contrib'
Making check in cif
make[2]: Entering directory
`/usr/local/Xray_Programs/CCP4/ccp4-onlylibs-dev/lib/clipper/clipper/cif'
make[2]: Warning: File `.deps/cif_data_io.Plo' has modification time 2e+04 s in
the future
source='cif_data_io.cpp' object='cif_data_io.lo' libtool=yes \
depfile='.deps/cif_data_io.Plo' tmpdepfile='.deps/cif_data_io.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile g++ -DHAVE_CONFIG_H -I. -I.
-I../.. -I/usr/local/lib -g -O2 -c -o cif_data_io.lo `test -f
'cif_data_io.cpp' || echo './'`cif_data_io.cpp
g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/local/lib -g -O2 -c cif_data_io.cpp
-MT cif_data_io.lo -MD -MP -MF .deps/cif_data_io.TPlo -fPIC -DPIC -o
.libs/cif_data_io.o
cif_data_io.cpp:54:29: error: mmdb/mmdb_mmcif.h: No such file or directory
Then a whole bunch of errors and "make" fails...
This file appears to be in several directories (eg. in the CCP4 install
directory) but changing the MMDB_CXXFLAGS to one of these has no effect...
Any ideas ?
Thanks,
Iain
-----Original Message-----
From: Mark Brooks [mailto:[EMAIL PROTECTED]
Sent: Wed 13-Dec-06 15:20
To: Kerr, Iain; [email protected]
Subject: Re: [ccp4bb]: Problems building Clipper
I guess this is a "ld" (dynamic linker) problem. Does the file
/etc/ld.so.conf contain a line with "/usr/local/lib" in it? If not,
add it, re-run ldconfig (sudo /sbin/ldconfig -v | grep fft) & try the
configure script again.
Maybe you need to also tell clipper where everything is using yet more
./configure script arguments. Particularly, the include files would
be hard for Clipper to locate by itself.
e.g. ./configure --with-fftw=PATH-TO-FFTW
FFTW_LIBS="-L/PATH-TO-FFTW-LIBS -lrfftw -lfftw"
FFTW_CXXFLAGS="-I/PATH-TO-FFTW -I/PATH-TO-FFTW-INCLUDES"
HTH
Mark
P.S. ./configure --help usually comes to the rescue in these types of
cases. Perhaps you tried that.
On 13/12/06, Kerr, Iain <[EMAIL PROTECTED]> wrote:
> *** For details on how to be removed from this list visit the ***
> *** CCP4 home page http://www.ccp4.ac.uk ***
>
>
> I'm having trouble building Clipper on FC6 (for Coot-0.1.2 install from
source code).
>
> As suggested in the coot README, I'm using
ftp://ftp.ccp4.ac.uk/prerelease/ccp4-onlylibs-dev.tar.gz
>
> After unpacking:
>
> cd lib
> cd clipper
>
> ./configure --enable-mmdb --enable-mtz --enable-cif --enable-mmdbold
--enable-minimol --enable-phs
>
> I get:
>
> checking for fftw_print_max_memory_usage in fftw... no
> checking for fftw_print_max_memory_usage in sfftw... no
> configure: error: If fftw exist on you system, are you sure you are using the
fftw libraries that was configured with --enable-float?
>
> In /usr/local/lib (which is in my PATH):
>
> librfftw.la
> libfftw.la
> libfftw.a
> librfftw.a
>
> Any ideas ? The FFTW libraries come from
http://www.ysbl.york.ac.uk/~emsley/software/fftw-2.1.5.tar.gz
>
> Thanks,
> Iain
>
>
>
>
>
>
>
>
--
Mark BROOKS
Telephone: 0169157968
Fax: 0169853715
INSTITUT de BIOCHIMIE et de BIOPHYSIQUE MOLECULAIRE et CELLULAIRE
UMR8619 - Bât 430 - Université de Paris-Sud
91405 ORSAY CEDEX
--
Mark BROOKS
Telephone: 0169157968
Fax: 0169853715
INSTITUT de BIOCHIMIE et de BIOPHYSIQUE MOLECULAIRE et CELLULAIRE
UMR8619 - Bât 430 - Université de Paris-Sud
91405 ORSAY CEDEX
