Dear Eleanor: But in my structure, the atom labelles are all right. Such as GLU A 15 :
ATOM 55 N GLU A 15 -59.930 -39.249 -9.123 1.00 30.10 N ATOM 56 CA GLU A 15 -60.573 -38.776 -7.889 1.00 30.54 C ATOM 57 CB GLU A 15 -61.533 -37.599 -8.146 1.00 31.08 C ATOM 58 CG GLU A 15 -61.014 -36.528 -9.124 1.00 35.70 C ATOM 59 CD GLU A 15 -61.459 -36.784 -10.589 1.00 40.21 C ATOM 60 OE1 GLU A 15 -60.561 -36.946 -11.467 1.00 40.16 O ATOM 61 OE2 GLU A 15 -62.701 -36.815 -10.851 1.00 41.17 O ATOM 62 C GLU A 15 -61.334 -39.901 -7.182 1.00 29.34 C ATOM 63 O GLU A 15 -61.335 -39.989 -5.947 1.00 29.37 O I think the labbels are all right. Thanks. On 8/10/07, Eleanor Dodson <[EMAIL PROTECTED]> wrote: > > There are conventions on which atoms is labelled OE1 and which OE2 for > example > > It doesnt change the electron density of structure calns an iouta but > conventions are conventions! > > Eleanor > > Jiamu Du wrote: > > Dear All: > > I have refined a structure. When I run procheck, a messege apears in > > the log file as below: > > > > Average value of CA-N-C-CB angle is 33.83 > > Standard deviation is 1.85 > > * Side chain atoms swapped for residues: > > * GLU A 15 ARG A 24 TYR A > > > > I have checked the density and the geometry of these residues. All > > this residues are all right. > > Is there anyone who have the same experience? How to deal with this > > situation? > > > > Thanks. > > > > -- > > Jiamu Du > > State Key Laboratory of Molecular Biology > > Institute of Biochemistry and Cell Biology Shanghai Institutes for > > Biological Sciences > > Chinese Academy of Sciences (CAS) > > -- Jiamu Du State Key Laboratory of Molecular Biology Institute of Biochemistry and Cell Biology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences (CAS)
