it was there for some time. Info about this and some other new and
not so new features can be found here:
http://www.ysbl.york.ac.uk/~garib/refmac/data/refmac_news.html
Some of the features like n mfo-l dfc map was there for 5.3 and may
be even earlier.
regards
Garib
On 8 Jul 2008, at 19:39, Meyer, Peter wrote:
Is this something new in refmac, or something undocumented (or am I
looking in the wrong place by checking LABOUT)?
-----Original Message-----
From: CCP4 bulletin board on behalf of Kevin Cowtan
Sent: Tue 7/8/2008 4:06 AM
To: [email protected]
Subject: Re: [ccp4bb] Definition of Fourier coefficients
Yup, refmac too.
Pavel Afonine wrote:
Not sure for other software, but in phenix.refine you can request to
output I*mFo-J*DFc map, where I and J are any user specified values.
Pavel.
On 7/7/2008 6:00 PM, Meyer, Peter wrote:
It is redundant, but it adds an additional step if someone wanted to
calculate something like a 3mFO-2DFc map.
Thanks,
Pete
-----Original Message-----
From: Kevin Cowtan [mailto:[EMAIL PROTECTED]
Sent: Mon 7/7/2008 10:18 AM
To: Meyer, Peter
Cc: [email protected]
Subject: Re: [ccp4bb] Definition of Fourier coefficients
Probably because in the classic implementation it is redundant, D
being derived directly from sigmaa.
Some programs refine D and sigmaa (or equivalent terms, such as
Lunin's alpha and beta) separately. This is conceptually
equivalent to
deriving D from sigmaa and refining the scale between Fo and Fc
simultaneously with sigmaa.
Kevin
Meyer, Peter wrote:
Slightly off-topic from the original question, but is there a
reason
that most programs don't output D for sigma_a coefficients?
Pete
-----Original Message-----
From: CCP4 bulletin board on behalf of Mayer, Mark (NIH/NICHD) [E]
Sent: Sat 7/5/2008 2:39 PM
To: [email protected]
Subject: [ccp4bb] Definition of Fourier coefficients
Hi,
What do m and D indicate in the Fourier coefficients for a 2mFo-
DFc map?
I've dug a bit in web and CCP4 doc but not found an explanation,
though I'm sure its there.
Thanks,
Mark
