I have the same problem
I got it to work like this:
1. Make your pqr file
2. start pymol, loading in the corresponding pdb file (this is
crucial).
3. give the full path to the pqr file in the gui, but don't click the
menu button that should give you the file browser, but just hit the
return key.
4. Then it will work to do the calculation. Make sure you don't touch
anything else, including the terminal used to spawn the pymol
session. Even touching that while it is doing the calculation I found
crashes it.
I admit this workaround blows chunks, but I don't have a better
solution.
This seems to happen both with the pymol available via ubuntu and also
Warren's proprietary version.
On Apr 4, 2009, at 3:00 PM, Talavera wrote:
Hi there,
Whenever I tried in Pymol to load the .pqr file to represent the
electrostatic surface the program crashes with Segmentation fault. I
am
using a laptop with Ubuntu 8.10. Does any of you have any suggestion
for
this problem.
Thanks a lot in advanced.
Ariel
*************************************************
Ariel Talavera Perez, PhD
Center of Molecular immunology
calle 216 esq. A 15, Atabey, Playa
Havana 11600, CUBA
email: [email protected]
*************************************************
