Hi,
I think that this is related to general pymol problem in ubuntu 8.10.
We had exchanged couple emails with Warren about this but I have not
heart back from him since.
It seems that there is a bug in pymol or Tkinter library and whenever
pymol tries to open special kind
of window it crashes with segfault. (try to open Help -> About Pymol)
(that bug is present in both python 2.4 an 2.5
and none of pymol versions works.)
see also
https://lists.ubuntu.com/archives/universe-bugs/2008-November/019193.html
Witek
Pete Meyer wrote:
Two suggestions...
Check that the coordinate fields in your pqr file are separated by
spaces (some pdb to pqr converters don't always do this in my hands,
probably due to large negative coordinate values). Also, try using your
.pqr file and .in file to run apbs from the command line and see if it
segfaults there.
Pete
Talavera wrote:
Hi there,
Whenever I tried in Pymol to load the .pqr file to represent the
electrostatic surface the program crashes with Segmentation fault. I am
using a laptop with Ubuntu 8.10. Does any of you have any suggestion for
this problem.
Thanks a lot in advanced.
Ariel
*************************************************
Ariel Talavera Perez, PhD
Center of Molecular immunology
calle 216 esq. A 15, Atabey, Playa
Havana 11600, CUBA
email: [email protected]
*************************************************
