Hey, can one of you guys email me one of these crash-inducing pqr files? PyMOL is not supposed to blow chunks!
Thanks, Warren > -----Original Message----- > From: W. G. Scott [mailto:[email protected]] On Behalf Of William G. > Scott > Sent: Saturday, April 04, 2009 2:21 PM > To: Talavera > Cc: [email protected] > Subject: Re: [ccp4bb] pymol crashes un ubuntu 8.10 > > I have the same problem > > I got it to work like this: > > 1. Make your pqr file > 2. start pymol, loading in the corresponding pdb file (this is > crucial). > 3. give the full path to the pqr file in the gui, but don't click the > menu button that should give you the file browser, but just hit the > return key. > 4. Then it will work to do the calculation. Make sure you don't touch > anything else, including the terminal used to spawn the pymol > session. Even touching that while it is doing the calculation I found > crashes it. > > I admit this workaround blows chunks, but I don't have a better > solution. > > This seems to happen both with the pymol available via ubuntu and also > Warren's proprietary version. > > On Apr 4, 2009, at 3:00 PM, Talavera wrote: > > > Hi there, > > > > Whenever I tried in Pymol to load the .pqr file to represent the > > electrostatic surface the program crashes with Segmentation fault. I > > am > > using a laptop with Ubuntu 8.10. Does any of you have any suggestion > > for > > this problem. > > > > Thanks a lot in advanced. > > Ariel > > > > ************************************************* > > Ariel Talavera Perez, PhD > > Center of Molecular immunology > > calle 216 esq. A 15, Atabey, Playa > > Havana 11600, CUBA > > email: [email protected] > > ************************************************* > > > >
