Mariah,
the sec. strc. recognition in pymol is not always getting it right
(sorry Warren).
Use dssp http://swift.cmbi.kun.nl/gv/dssp/ to get the proper sec. strc
assignment.
There is a nice tool by James Stroud http://structure.usc.edu/dssp2pdb/
to transfer the information from the dssp out-file to the pdb file.
Pymol will read this information from the pdb file and show it.
Best regards,
Guenter
Dear All,
I have a question about PYMOL.
I am trying to make a cartoon diagram of my protein showing the
secondary structural elements. However for some reasons it is not
showing the N terminal strand and showing that as a loop. Is there
any command for selecting a range of residues and showing them as a
strand or helix.
Thanks for helping.
Mariah
--
Mariah Jones
Department of Biochemistry
University of Florida
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***********************************
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Fachbereich Biologie
Sektion Naturwissenschaften
Universitaet Konstanz
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Postfach M665
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