I used proteinmodelportal.org to generate homology models. It worked well for us.
Huiming Sent from my iPhone On Feb 20, 2013, at 12:39 PM, "Jacob Keller" <[email protected]> wrote: > Dear Crystallographers, > > it has been my experience that homology modelling programs get folds pretty > well, but sometimes the details are pretty obviously bad, like too-close > contacts. One might think that the modelling software would put in a sort of > "polishing" step, but they don't seem to. Is there any way to trick the CCP4 > or other software to fix these things, such as by simulated annealing or > otherwise, I guess without any weight on the [non-existent] structure factors? > > Thanks, > > Jacob > > -- > ******************************************* > Jacob Pearson Keller, PhD > Postdoctoral Associate > HHMI Janelia Farms Research Campus > email: [email protected] > *******************************************
