Hi,
I just installed the update using ccp4um.
All I get now is:
>ccp4i
Def file /software/ccp4-6.4.0/share/ccp4i/etc/unix/configure.def
does not have correct file label configure
Def file /software/ccp4-6.4.0/share/ccp4i/etc/preferences.def.dist
does not have correct file label preferences
Error in startup script: can't read "array(MAPVIEWER_DEFAULT)": no such element
in array
while executing
"set viewercmd $array(MAPVIEWER_DEFAULT)"
(procedure "set_default_mapviewer" line 9)
invoked from within
"set_default_mapviewer $arrayname"
("preferences" arm line 2)
invoked from within
"switch -- $taskname {
directories {
catch {update_defdir_menu $arrayname}
} configure {
# We over-write the user TYPEDEF_LIST with..."
(procedure "InitialisePreferences" line 113)
invoked from within
"InitialisePreferences preferences preferences"
(file "/software/ccp4-6.4.0/share/ccp4i/bin/ccp4i.tcl" line 128)
invoked from within
"source [file join $env(CCP4I_TOP) bin ccp4i.tcl]"
(file "/software/ccp4-6.4.0/bin/ccp4i" line 12)
What went wrong?
Am 06.11.2013 um 13:52 schrieb Andrey Lebedev <[email protected]>:
> Dear CCP4 Users
>
> An update for the CCP4-6.4.0 series has just been released. This is the first
> update for both CCP4 and ARP/wARP in tandem.
>
> The ARP/wARP component of this update will be available to those Mac and
> Linux users who have previously installed both packages via the CCP4 Package
> manager or from the joint bundle downloaded from CCP4 web-site. A standalone
> ARP/wARP package including the current update can be downloaded from the
> EMBL-Hamburg site at www.arp-warp.org<http://www.arp-warp.org/>.
>
> The following changes will be applied to the ARP/wARP installation:
>
> • The use of non-crystallographic symmetry for protein chain tracing has been
> enabled (it was accidentally disabled in version 7.4).
> • The `SAD refinement protocol' (Murshudov et al 2011) has undergone many
> fixes and now works well.
> • The routine for ligand identification has been made faster and some small
> bugs have been fixed.
> • A few bugs have been fixed in the ARP/wARP installer and shell-specific
> problems sometimes occurring on Linux should now be cured.
> • The manual has been updated.
>
> The following changes will be applied to the CCP4-6.4.0 installation:
>
> • MrBUMP (all): a new option of model re-building after SHELXE; a fix for
> phaser_sculptor dispatcher.
> • Xia2 (windows): update to release 0.3.6.3 (fixes ctruncate issue).
> • aimless (all): bug fixes.
> • pointless (all): bug fixes.
> • ViewHKL (all): additional visual control to enhance weak reflections and
> bug fixes.
> • truncate (Mac): Fixed harvesting option of old truncate.
> • Molrep: New interface.
> • Update (all): Increased maximum waiting time for background update check in
> ccp4i.
>
> Andrey Lebedev
>
>
> --
> Scanned by iCritical.
>
Mit freundlichen Grüßen
Joachim Reichelt
________________________________
Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124
Braunschweig | www.helmholtz-hzi.de
Das HZI ist seit 2007 zertifiziertes Mitglied im "audit berufundfamilie"
Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe,
Bundesministerium für Bildung und Forschung
Stellvertreter: Rüdiger Eichel, Abteilungsleiter Niedersächsisches Ministerium
für Wissenschaft und Kultur
Geschäftsführung: Prof. Dr. Dirk Heinz; Dr. Michael Strätz
Gesellschaft mit beschränkter Haftung (GmbH)
Sitz der Gesellschaft: Braunschweig
Handelsregister: Amtsgericht Braunschweig, HRB 477
