Dear all
A comment to my last e-mail
If your ccp4 installation is not write-protected,
do not use sudo, just run
ccp4um
Regards
Andrey
On 6 Nov 2013, at 14:49, Lebedev, Andrey (STFC,RAL,SC) wrote:
>
> Dear all
>
> If you had a problem similar to that Joachim and Ingo had (see below), please
> run
> sudo <path>/ccp4-6.4.0/bin/ccp4um
> where <path> is the full path to your ccp4-6.4.0 installation,
> and uninstall the last update.
>
> Then you can launch ccp4i and install it again as usual.
>
> Thanks!
>
> Andrey
>
> On 6 Nov 2013, at 13:13, Joachim Reichelt wrote:
>
>> Hi,
>>
>> I just installed the update using ccp4um.
>> All I get now is:
>>
>>> ccp4i
>> Def file /software/ccp4-6.4.0/share/ccp4i/etc/unix/configure.def
>> does not have correct file label configure
>> Def file /software/ccp4-6.4.0/share/ccp4i/etc/preferences.def.dist
>> does not have correct file label preferences
>> Error in startup script: can't read "array(MAPVIEWER_DEFAULT)": no such
>> element in array
>> while executing
>> "set viewercmd $array(MAPVIEWER_DEFAULT)"
>> (procedure "set_default_mapviewer" line 9)
>> invoked from within
>> "set_default_mapviewer $arrayname"
>> ("preferences" arm line 2)
>> invoked from within
>> "switch -- $taskname {
>> directories {
>> catch {update_defdir_menu $arrayname}
>> } configure {
>> # We over-write the user TYPEDEF_LIST with..."
>> (procedure "InitialisePreferences" line 113)
>> invoked from within
>> "InitialisePreferences preferences preferences"
>> (file "/software/ccp4-6.4.0/share/ccp4i/bin/ccp4i.tcl" line 128)
>> invoked from within
>> "source [file join $env(CCP4I_TOP) bin ccp4i.tcl]"
>> (file "/software/ccp4-6.4.0/bin/ccp4i" line 12)
>>
>>
>> What went wrong?
>>
>> Am 06.11.2013 um 13:52 schrieb Andrey Lebedev <[email protected]>:
>>
>>> Dear CCP4 Users
>>>
>>> An update for the CCP4-6.4.0 series has just been released. This is the
>>> first update for both CCP4 and ARP/wARP in tandem.
>>>
>>> The ARP/wARP component of this update will be available to those Mac and
>>> Linux users who have previously installed both packages via the CCP4
>>> Package manager or from the joint bundle downloaded from CCP4 web-site. A
>>> standalone ARP/wARP package including the current update can be downloaded
>>> from the EMBL-Hamburg site at www.arp-warp.org<http://www.arp-warp.org/>.
>>>
>>> The following changes will be applied to the ARP/wARP installation:
>>>
>>> • The use of non-crystallographic symmetry for protein chain tracing has
>>> been enabled (it was accidentally disabled in version 7.4).
>>> • The `SAD refinement protocol' (Murshudov et al 2011) has undergone many
>>> fixes and now works well.
>>> • The routine for ligand identification has been made faster and some small
>>> bugs have been fixed.
>>> • A few bugs have been fixed in the ARP/wARP installer and shell-specific
>>> problems sometimes occurring on Linux should now be cured.
>>> • The manual has been updated.
>>>
>>> The following changes will be applied to the CCP4-6.4.0 installation:
>>>
>>> • MrBUMP (all): a new option of model re-building after SHELXE; a fix for
>>> phaser_sculptor dispatcher.
>>> • Xia2 (windows): update to release 0.3.6.3 (fixes ctruncate issue).
>>> • aimless (all): bug fixes.
>>> • pointless (all): bug fixes.
>>> • ViewHKL (all): additional visual control to enhance weak reflections and
>>> bug fixes.
>>> • truncate (Mac): Fixed harvesting option of old truncate.
>>> • Molrep: New interface.
>>> • Update (all): Increased maximum waiting time for background update check
>>> in ccp4i.
>>>
>>> Andrey Lebedev
>>>
>>>
>>> --
>>> Scanned by iCritical.
>>>
>>
>> Mit freundlichen Grüßen
>>
>> Joachim Reichelt
>>
>>
>>
>>
>>
>>
>>
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>
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