Dear all
If you had a problem similar to that Joachim and Ingo had (see below), please
run
sudo <path>/ccp4-6.4.0/bin/ccp4um
where <path> is the full path to your ccp4-6.4.0 installation,
and uninstall the last update.
Then you can launch ccp4i and install it again as usual.
Thanks!
Andrey
On 6 Nov 2013, at 13:13, Joachim Reichelt wrote:
> Hi,
>
> I just installed the update using ccp4um.
> All I get now is:
>
>> ccp4i
> Def file /software/ccp4-6.4.0/share/ccp4i/etc/unix/configure.def
> does not have correct file label configure
> Def file /software/ccp4-6.4.0/share/ccp4i/etc/preferences.def.dist
> does not have correct file label preferences
> Error in startup script: can't read "array(MAPVIEWER_DEFAULT)": no such
> element in array
> while executing
> "set viewercmd $array(MAPVIEWER_DEFAULT)"
> (procedure "set_default_mapviewer" line 9)
> invoked from within
> "set_default_mapviewer $arrayname"
> ("preferences" arm line 2)
> invoked from within
> "switch -- $taskname {
> directories {
> catch {update_defdir_menu $arrayname}
> } configure {
> # We over-write the user TYPEDEF_LIST with..."
> (procedure "InitialisePreferences" line 113)
> invoked from within
> "InitialisePreferences preferences preferences"
> (file "/software/ccp4-6.4.0/share/ccp4i/bin/ccp4i.tcl" line 128)
> invoked from within
> "source [file join $env(CCP4I_TOP) bin ccp4i.tcl]"
> (file "/software/ccp4-6.4.0/bin/ccp4i" line 12)
>
>
> What went wrong?
>
> Am 06.11.2013 um 13:52 schrieb Andrey Lebedev <[email protected]>:
>
>> Dear CCP4 Users
>>
>> An update for the CCP4-6.4.0 series has just been released. This is the
>> first update for both CCP4 and ARP/wARP in tandem.
>>
>> The ARP/wARP component of this update will be available to those Mac and
>> Linux users who have previously installed both packages via the CCP4 Package
>> manager or from the joint bundle downloaded from CCP4 web-site. A standalone
>> ARP/wARP package including the current update can be downloaded from the
>> EMBL-Hamburg site at www.arp-warp.org<http://www.arp-warp.org/>.
>>
>> The following changes will be applied to the ARP/wARP installation:
>>
>> • The use of non-crystallographic symmetry for protein chain tracing has
>> been enabled (it was accidentally disabled in version 7.4).
>> • The `SAD refinement protocol' (Murshudov et al 2011) has undergone many
>> fixes and now works well.
>> • The routine for ligand identification has been made faster and some small
>> bugs have been fixed.
>> • A few bugs have been fixed in the ARP/wARP installer and shell-specific
>> problems sometimes occurring on Linux should now be cured.
>> • The manual has been updated.
>>
>> The following changes will be applied to the CCP4-6.4.0 installation:
>>
>> • MrBUMP (all): a new option of model re-building after SHELXE; a fix for
>> phaser_sculptor dispatcher.
>> • Xia2 (windows): update to release 0.3.6.3 (fixes ctruncate issue).
>> • aimless (all): bug fixes.
>> • pointless (all): bug fixes.
>> • ViewHKL (all): additional visual control to enhance weak reflections and
>> bug fixes.
>> • truncate (Mac): Fixed harvesting option of old truncate.
>> • Molrep: New interface.
>> • Update (all): Increased maximum waiting time for background update check
>> in ccp4i.
>>
>> Andrey Lebedev
>>
>>
>> --
>> Scanned by iCritical.
>>
>
> Mit freundlichen Grüßen
>
> Joachim Reichelt
>
>
>
>
>
>
>
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