Dear Rongjin,
I think that HADDOCK (http://www.nmr.chem.uu.nl/haddock/) is the best
solution for your requests.
Danilo
On Tue, 7 Jan 2014 16:36:43 -0500, rjguan <[email protected]> wrote:
Dear All,
We have a RNA binding protein with structure known. We want to dock a
RNA molecule to
the protein structure, and we roughly know where RNA binds to the
protein. Which program
does a better job (generally speaking) in the following cases:
1. RNA is rigid;
2. RNA is allowed to change conformation.
Please share your experience.
Thanks
Rongjin Guan
