Hello Peter,

1、THE RESOLUTION OF THE DATA IS 2.5 angstrom. After first refinement of
> refmac5 I got R factor which is 0.26 and R FREE which is 0.31. My question
> is what the final R factor and R FREE should be after several rounds of
> refinement by refmac5 and coot.
>

answer can be found here: Acta Cryst. D65, 297-300 (2009)
Direct link:
http://phenix-online.org/papers/lv5003_reprint.pdf

 2、At which map level(e/A3 or rmsd)should I refine the data by coot?
>

I guess you meant "refine model parameters".. just a remark. We normally
refine atomic (and non-atomic) model parameters against measured data using
some agreement criteria and a minimization method.. etc etc, you know all
this!
As to your actual question: if you hope for a meaningful answer, at least
you need to tell what map you use, otherwise you'll get some spam.

 Pavel

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