Phenix does even more, it adds TER after ions and ligands, so again manual messing is needed. However they may have a jiffy to fix it.
FF Dr Felix Frolow Professor of Structural Biology and Biotechnology, Department of Molecular Microbiology and Biotechnology Tel Aviv University 69978, Israel Acta Crystallographica F, co-editor e-mail: [email protected] Tel: ++972-3640-8723 Fax: ++972-3640-9407 Cellular: 0547 459 608 On May 14, 2014, at 07:23 , Robbie Joosten <[email protected]> wrote: > Dear Felix, > > I recently had the same problem. I didn't think TER records were a big deal. > I never had a program that did weird thing because of missing TER records. > But well, orders are orders, so we need TER records for deposition. It would > be nice if all refinement programs would write those. AFAIK, Phenix already > does. > > Rather then putting them in manually, I ended up using pdb_extract to convert > my pdb file to mmCIF. A nice bonus is that you can throw in the log files > from indexing and phasing which saves a lot of typing later in the deposition > process. > > Cheers, > Robbie > > Sent from my Windows Phone > Van: Felix Frolow > Verzonden: 13-5-2014 23:26 > Aan: [email protected] > Onderwerp: [ccp4bb] TER in PDB file > > Community! > I am in the process of PDB deposition. > I have used for refinement Refmac. > I enter to refinement cycle PDB file with TER separators. > After refinement they disappear. > PDB validation server (option 1 with geometrical parameters report ) DEMAND > TER separator. > In my structure there are 28 hetero-mers. > Is it sane: > To demand such thing? > Not to supply such thing? > Do I miss something ? > Does community punch in TER cards manually ? > > FF > > Dr Felix Frolow > Professor of Structural Biology and Biotechnology, Department of Molecular > Microbiology and Biotechnology > Tel Aviv University 69978, Israel > > Acta Crystallographica F, co-editor > > e-mail: [email protected] > Tel: ++972-3640-8723 > Fax: ++972-3640-9407 > Cellular: 0547 459 608 >
