Dear Remie, did you check (with a text editor) the PDB file saved from coot if it actually reordered the chains inside the file? Maybe chain C is still listed first, and maybe this is what pymol takes as order.
Regards, Tim On Thu, Aug 07, 2014 at 11:19:42AM -0400, Remie Fawaz-Touma wrote: > Hi everyone, > > Does anyone know how to rearrange chains when looking at a structure in PyMol > (maybe it has to be done in coot, don?t know). > > I have the ligand first now in PyMol and would like to see the sequence of > the protein first, then ligand. > > It is worth mentioning that I did reorder the chains in coot: Extensions > > Modelling > Reorder chains, and chain A is my protein, B is the ligand and C > are the waters. > > So why don?t I see the same order in PyMol and how do I fix that? > > Thanks for any help, > > Remie -- -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A
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