Hi Dr. Gruene, Thanks for your input.
I have actually checked pdb and the chains are listed in the order A, B then C; except for the LinkR between the ligand units and between some amino acids where there are gaps (those link records were towards the top), so I moved those LinkR corresponding to the ligands and put them right after the ligand atoms list (even though I didn’t think it matters), but I still have the same problem: PyMol shows chain B first in the sequence display. Any suggestion? Thank you, Remie On Aug 7, 2014, at 2:30 PM, Tim Gruene <[email protected]> wrote: > Dear Remie, > > did you check (with a text editor) the PDB file saved from coot if it actually > reordered the chains inside the file? Maybe chain C is still listed first, and > maybe this is what pymol takes as order. > > Regards, > Tim > > On Thu, Aug 07, 2014 at 11:19:42AM -0400, Remie Fawaz-Touma wrote: >> Hi everyone, >> >> Does anyone know how to rearrange chains when looking at a structure in >> PyMol (maybe it has to be done in coot, don?t know). >> >> I have the ligand first now in PyMol and would like to see the sequence of >> the protein first, then ligand. >> >> It is worth mentioning that I did reorder the chains in coot: Extensions > >> Modelling > Reorder chains, and chain A is my protein, B is the ligand and C >> are the waters. >> >> So why don?t I see the same order in PyMol and how do I fix that? >> >> Thanks for any help, >> >> Remie > > -- > -- > Dr Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > GPG Key ID = A46BEE1A >
