Rf_used is the R factor for the non-free reflections. If you do the plot the 4SSQ/L**2 is converted to As..
E On 7 December 2017 at 11:50, Xiao Lei <[email protected]> wrote: > Thanks Eleanor, yes, I looked at that table and tried to find out the > Rfree and R, I know the 4SSQ/LL means column means resolution bins but I > did not know what column means Rfac (The Rf_free means Rfree I guess). > > > On Thu, Dec 7, 2017 at 2:58 AM, Eleanor Dodson <0000176a9d5ebad7-dmarc- > [email protected]> wrote: > >> Dont you look at the graphs from the log file? >> >> This table gives you all sorts of information including R and Rfree in >> resolution shells.. >> >> Eleanor >> **** Things for loggraph, R factor and >> others **** >> >> >> $TABLE: Cycle 11. Rfactor analysis, F distribution v resln : >> $GRAPHS:Cycle 11. <Rfactor> v. resln :N:1,6,7,11,12: >> :Cycle 11. <Fobs> and <Fc> v. resln :N:1,4,5,9,10: >> :Cycle 11. % observed v. resln :N:1,3: >> $$ >> M(4SSQ/LL) NR_used %_obs M(Fo_used) M(Fc_used) Rf_used WR_used >> NR_free M(Fo_free) M(Fc_free) Rf_free WR_free $$ >> $$ >> 0.008 1365 96.51 726.5 585.6 0.51 0.55 72 686.2 >> 539.4 0.59 0.62 >> 0.023 2411 98.00 498.1 446.2 0.54 0.56 131 489.5 >> 412.9 0.57 0.58 >> 0.037 3086 97.10 536.9 429.7 0.55 0.56 164 563.6 >> 431.4 0.57 0.57 >> 0.052 3605 96.71 600.3 450.7 0.55 0.55 211 595.3 >> 455.8 0.59 0.59 >> 0.067 4075 96.11 516.0 355.9 0.56 0.56 199 552.2 >> 354.8 0.55 0.54 >> 0.082 4558 97.20 425.2 288.7 0.56 0.55 228 425.1 >> 304.8 0.57 0.54 >> 0.096 5010 97.84 322.6 230.4 0.55 0.53 256 320.5 >> 229.6 0.60 0.58 >> 0.111 5376 98.91 252.1 193.5 0.55 0.53 273 256.8 >> 195.7 0.52 0.50 >> 0.126 5727 99.11 213.0 170.2 0.53 0.51 289 209.4 >> 170.1 0.59 0.56 >> 0.141 6121 99.21 174.5 142.0 0.54 0.52 307 171.1 >> 144.9 0.61 0.57 >> 0.155 6381 99.31 144.9 122.6 0.47 0.45 341 136.1 >> 115.1 0.57 0.53 >> 0.170 6677 99.12 129.9 107.6 0.55 0.52 339 129.5 >> 110.5 0.60 0.58 >> 0.185 6963 99.12 116.6 93.8 0.55 0.53 390 113.4 >> 96.3 0.54 0.53 >> 0.199 7194 99.09 100.7 79.4 0.55 0.54 405 106.4 >> 84.0 0.55 0.53 >> 0.214 7427 99.18 87.6 70.9 0.53 0.52 400 88.9 >> 71.3 0.53 0.52 >> 0.229 7702 98.68 77.3 61.2 0.52 0.52 395 80.2 >> 61.7 0.54 0.53 >> 0.244 7963 98.92 65.6 52.3 0.48 0.48 428 65.5 >> 53.7 0.54 0.54 >> 0.258 8198 98.48 56.8 44.6 0.46 0.46 437 53.5 >> 43.6 0.49 0.49 >> 0.273 8375 98.66 47.7 37.5 0.43 0.43 428 48.0 >> 37.6 0.47 0.48 >> 0.288 8611 98.24 40.9 32.1 0.42 0.42 450 41.8 >> 32.1 0.50 0.50 >> $$ >> >> >> >> On 7 December 2017 at 01:07, Bernhard Rupp <[email protected]> >> wrote: >> >>> You can find these numbers in the header of the output model coordinate >>> file. >>> >>> >>> >>> BR >>> >>> >>> >>> *From:* CCP4 bulletin board [mailto:[email protected]] *On Behalf >>> Of *Xiao Lei >>> *Sent:* Wednesday, December 6, 2017 2:40 PM >>> *To:* [email protected] >>> *Subject:* [ccp4bb] How to find the Rfree and R in the highest >>> resolution bin in Refmac 5? >>> >>> >>> >>> Dear All, >>> >>> I am asking how to find the Rfree and R in the highest resolution bin in >>> Refmac 5 output? >>> >>> I used Refmac5 in refinement of protein structure at 3A resolution. >>> Output of Refmac5 gives Rfee and R as: >>> >>> Initial Final >>> >>> R factor 0.2900 0.2052 >>> >>> R free 0.3015 0.2639 >>> >>> >>> I'd also like to see the Rfree and R in the highest resolution bin. I >>> checked log file in Refmac5 and found M(4SSQ/LL) resolution range table >>> with columns of Rf_free and WR_free, I searched in internet and still could >>> not understand the Rf_free and WR_free label meaning. I'd like to find >>> something like Rfree XXX (XXX); R XXX (XXX) (the highest resolution bin >>> value in the parenthesis). >>> >>> >>> >>> thanks ahead. >>> >>> >>> >>> >>> >> >> >
