I see. Thanks Eleanor! On Thu, Dec 7, 2017 at 4:33 AM, Eleanor Dodson <eleanor.dod...@york.ac.uk> wrote:
> Rf_used is the R factor for the non-free reflections. > > If you do the plot the 4SSQ/L**2 is converted to As.. > > E > > On 7 December 2017 at 11:50, Xiao Lei <xiaolei...@gmail.com> wrote: > >> Thanks Eleanor, yes, I looked at that table and tried to find out the >> Rfree and R, I know the 4SSQ/LL means column means resolution bins but I >> did not know what column means Rfac (The Rf_free means Rfree I guess). >> >> >> On Thu, Dec 7, 2017 at 2:58 AM, Eleanor Dodson < >> 0000176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote: >> >>> Dont you look at the graphs from the log file? >>> >>> This table gives you all sorts of information including R and Rfree in >>> resolution shells.. >>> >>> Eleanor >>> **** Things for loggraph, R factor and >>> others **** >>> >>> >>> $TABLE: Cycle 11. Rfactor analysis, F distribution v resln : >>> $GRAPHS:Cycle 11. <Rfactor> v. resln :N:1,6,7,11,12: >>> :Cycle 11. <Fobs> and <Fc> v. resln :N:1,4,5,9,10: >>> :Cycle 11. % observed v. resln :N:1,3: >>> $$ >>> M(4SSQ/LL) NR_used %_obs M(Fo_used) M(Fc_used) Rf_used WR_used >>> NR_free M(Fo_free) M(Fc_free) Rf_free WR_free $$ >>> $$ >>> 0.008 1365 96.51 726.5 585.6 0.51 0.55 72 686.2 >>> 539.4 0.59 0.62 >>> 0.023 2411 98.00 498.1 446.2 0.54 0.56 131 489.5 >>> 412.9 0.57 0.58 >>> 0.037 3086 97.10 536.9 429.7 0.55 0.56 164 563.6 >>> 431.4 0.57 0.57 >>> 0.052 3605 96.71 600.3 450.7 0.55 0.55 211 595.3 >>> 455.8 0.59 0.59 >>> 0.067 4075 96.11 516.0 355.9 0.56 0.56 199 552.2 >>> 354.8 0.55 0.54 >>> 0.082 4558 97.20 425.2 288.7 0.56 0.55 228 425.1 >>> 304.8 0.57 0.54 >>> 0.096 5010 97.84 322.6 230.4 0.55 0.53 256 320.5 >>> 229.6 0.60 0.58 >>> 0.111 5376 98.91 252.1 193.5 0.55 0.53 273 256.8 >>> 195.7 0.52 0.50 >>> 0.126 5727 99.11 213.0 170.2 0.53 0.51 289 209.4 >>> 170.1 0.59 0.56 >>> 0.141 6121 99.21 174.5 142.0 0.54 0.52 307 171.1 >>> 144.9 0.61 0.57 >>> 0.155 6381 99.31 144.9 122.6 0.47 0.45 341 136.1 >>> 115.1 0.57 0.53 >>> 0.170 6677 99.12 129.9 107.6 0.55 0.52 339 129.5 >>> 110.5 0.60 0.58 >>> 0.185 6963 99.12 116.6 93.8 0.55 0.53 390 113.4 >>> 96.3 0.54 0.53 >>> 0.199 7194 99.09 100.7 79.4 0.55 0.54 405 106.4 >>> 84.0 0.55 0.53 >>> 0.214 7427 99.18 87.6 70.9 0.53 0.52 400 88.9 >>> 71.3 0.53 0.52 >>> 0.229 7702 98.68 77.3 61.2 0.52 0.52 395 80.2 >>> 61.7 0.54 0.53 >>> 0.244 7963 98.92 65.6 52.3 0.48 0.48 428 65.5 >>> 53.7 0.54 0.54 >>> 0.258 8198 98.48 56.8 44.6 0.46 0.46 437 53.5 >>> 43.6 0.49 0.49 >>> 0.273 8375 98.66 47.7 37.5 0.43 0.43 428 48.0 >>> 37.6 0.47 0.48 >>> 0.288 8611 98.24 40.9 32.1 0.42 0.42 450 41.8 >>> 32.1 0.50 0.50 >>> $$ >>> >>> >>> >>> On 7 December 2017 at 01:07, Bernhard Rupp <hofkristall...@gmail.com> >>> wrote: >>> >>>> You can find these numbers in the header of the output model coordinate >>>> file. >>>> >>>> >>>> >>>> BR >>>> >>>> >>>> >>>> *From:* CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] *On Behalf >>>> Of *Xiao Lei >>>> *Sent:* Wednesday, December 6, 2017 2:40 PM >>>> *To:* CCP4BB@JISCMAIL.AC.UK >>>> *Subject:* [ccp4bb] How to find the Rfree and R in the highest >>>> resolution bin in Refmac 5? >>>> >>>> >>>> >>>> Dear All, >>>> >>>> I am asking how to find the Rfree and R in the highest resolution bin >>>> in Refmac 5 output? >>>> >>>> I used Refmac5 in refinement of protein structure at 3A resolution. >>>> Output of Refmac5 gives Rfee and R as: >>>> >>>> Initial Final >>>> >>>> R factor 0.2900 0.2052 >>>> >>>> R free 0.3015 0.2639 >>>> >>>> >>>> I'd also like to see the Rfree and R in the highest resolution bin. I >>>> checked log file in Refmac5 and found M(4SSQ/LL) resolution range table >>>> with columns of Rf_free and WR_free, I searched in internet and still could >>>> not understand the Rf_free and WR_free label meaning. I'd like to find >>>> something like Rfree XXX (XXX); R XXX (XXX) (the highest resolution bin >>>> value in the parenthesis). >>>> >>>> >>>> >>>> thanks ahead. >>>> >>>> >>>> >>>> >>>> >>> >>> >> >
