Re: [ccp4bb] Calculating RMSD of a loop

[Wim Burmeister]

Hello, I admit that I only found the solution to import the pdb's after alignment of the body of the protein into a spreadsheet (LibreOffice Calc) and then to calculate the rms of the atoms of the loop (or of the CA atoms of the loop). Best wishes Wim On 17/09/2019 15:31, Kyle Gregory wrote: Hi all, What is the best/easiest way to calculate RMSD of a loop for 2 c-alpha aligned structures? Thought I could do this in Coot but I only see this if I align the specific loops, which I don't want to do. Thanks, Kyle To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 -- Changement climatique : «Les autres combats n’ont aucun sens si celui-là est perdu» (Aurélien Barrau) To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1