Yet another way is: phenix.superpose_pdbs fixed.pdb moving.pdb selection_fixed="chain A and and resseq 1:10 and name CA" selection_moving="chain B and resseq 1:10 and name CA"
or using the GUI. Pavel On Tue, Sep 17, 2019 at 8:06 AM Folmer Fredslund <[email protected]> wrote: > Dear Kyle, > > As other non-CCP4 solutions have also been suggested, perhaps I can > suggest using PyMOL? > https://pymolwiki.org/index.php/Align > Here's a nice wiki article about what you can do with the align command. > > > If you're already familiar with scripting languages it's quite easy, and > you can load your already superimposed structures and calculate on the > selection you want. > > > Hope this helps, > Folmer Fredslund > > > tir. 17. sep. 2019 15.42 skrev Kyle Gregory < > [email protected]>: > >> Hi all, >> >> What is the best/easiest way to calculate RMSD of a loop for 2 c-alpha >> aligned structures? >> Thought I could do this in Coot but I only see this if I align the >> specific loops, which I don't want to do. >> >> Thanks, >> >> Kyle >> >> ------------------------------ >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 >> > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
