Thank you Kay!
Specifying the explicit path did the trick (this is what I get for being lazy
and using shortcuts). In addition, I tried the durin plugin and that also
worked.
For anyone who might have encountered this issue—both of the following
expedients fixed the problem for me:
1) Go to:
https://strucbio.biologie.uni-konstanz.de/pub/mac_bin/
and download the dectris-neggia.so file. Place it in the directory of
your choice
(and be careful when you specify the path in your
“LIB=/…path…/dectris-neggia.so” statement).
2) Go to:
https://github.com/DiamondLightSource/durin/releases/tag/2019v1
and download the durin-plugin-macos.zip file
Unzip it and place the durin-plugin.so file in the directory of your
choice.
Cheers,
Pat Loll
> On 1 Jun 2022, at 4:08 AM, Kay Diederichs <[email protected]>
> wrote:
>
> Hi Patrick,
>
> I have not seen similar reports.
>
> The 2nd error message has
> ~/Desktop/dectris-neggia.so, 258): image not found
> so maybe the ~ is not understood; try to specify more explicitly
> LIB=/Users/ploll/Desktop/dectris-neggia.so
> or whatever the name of your $HOME is.
>
> Could you try durin-plugin.so ?
>
> Possibly your machine has a problem; could you try a different Mac?
> If all fails, send me a link to the data.
>
> Best wishes,
> Kay
>
> On Tue, 31 May 2022 15:18:23 -0400, Patrick Loll <[email protected]> wrote:
>
>> Hi all,
>>
>> Apologies for the non-CCP4 question:
>>
>> I’m attempting to use XDS to process some data from the Eiger detector at
>> the AMX beamline (NSLS-2 17-ID-1).
>>
>> To read in the Neggia library, my XDS.INP contains the line
>> “LIB=/…path.../dectris-neggia-mac.so"
>>
>> I’ve successfully used the same dectris-neggia-mac.so library file for
>> years, but now I obtain an error message (see error message #1 below), which
>> suggests that the library file is now problematic.
>>
>> For this reason, I grabbed a copy of dectris-neggia.so from
>> https://strucbio.biologie.uni-konstanz.de/pub/mac_bin/ (thank you!). Alas,
>> this file also gives a similar, but non-identical error (error message #2
>> below).
>>
>> In both cases, the error appears to involve an inability to open the neggia
>> library. I’ve double-checked that the library files are indeed present, and
>> that I’m specifying the correct path.
>>
>> This error seems to be associated with the current version of XDS, since a
>> data set that I could process last year without problem is now giving an
>> error (same data, same computer—Intel Mac running OSX 10.14.6).
>>
>> I’m not sure how to proceed. Any suggestions welcome.
>>
>> Thanks,
>>
>> Pat Loll
>>
>> ---------------------------------------------------------------------------------------
>> Patrick J. Loll, Ph. D. (he, him, his)
>> Professor of Biochemistry & Molecular Biology
>> Drexel University College of Medicine
>> Room 10-102 New College Building
>> 245 N. 15th St., Mailstop 497
>> Philadelphia, PA 19102 USA
>>
>> (215) 762-7706
>> [email protected]
>> [email protected]
>>
>>
>>
>> _________ERROR MESSAGE #1________________
>>
>> master_file=../G7_558_master.h5
>> [generic_data_plugin] - INFO - generic_open
>> + library = </sw/share/xtal/XDS/dectris-neggia-mac.so>
>> + template_name = <../G7_558_master.h5>
>> + dll_filename = </sw/share/xtal/XDS/dectris-neggia-mac.so>
>> + image_data_filename = <../G7_558_master.h5>
>> [generic_data_plugin] - ERROR - Cannot open Handle:
>> dlopen(/sw/share/xtal/XDS/d
>> ectris-neggia-mac.so, 258): no suitable image found. Did find:
>> /sw/share/xtal
>> /XDS/dectris-neggia-mac.so: file too short
>> /sw/share/xtal/XDS/dectris-neggia-m
>> ac.so: file too short
>> generic_getfrm: could not open /sw/share/xtal/XDS/dectris-neggia-mac.so ier=
>> -2
>> [generic_data_plugin] - INFO - generic_get_header
>> [generic_data_plugin] - ERROR - Cannot open Handle
>> ?
>> generic_getfrm: could not get header from ../G7_558_master.h5 ier=
>> -1
>> INFO(1:5)=vendor/major version/minor version/patch/timestamp= 1**** 0
>> 0 0
>> generic_getfrm: data are from Dectris
>> generic_getfrm: expected info_array(2)=0 but got 123456789
>>
>> !!! ERROR !!! Unknown image format: ../G7_558_000001.h5
>>
>>
>>
>> _________ERROR MESSAGE #2________________
>>
>> master_file=../G7_558_master.h5
>> [generic_data_plugin] - INFO - generic_open
>> + library = <~/Desktop/dectris-neggia.so>
>> + template_name = <../G7_558_master.h5>
>> + dll_filename = <~/Desktop/dectris-neggia.so>
>> + image_data_filename = <../G7_558_master.h5>
>> [generic_data_plugin] - ERROR - Cannot open Handle:
>> dlopen(~/Desktop/dectris-ne
>> ggia.so, 258): image not found
>> generic_getfrm: could not open ~/Desktop/dectris-neggia.so ier= -2
>> [generic_data_plugin] - INFO - generic_get_header
>> [generic_data_plugin] - ERROR - Cannot open Handle
>> ?
>> generic_getfrm: could not get header from ../G7_558_master.h5 ier=
>> -1
>> INFO(1:5)=vendor/major version/minor version/patch/timestamp= 1**** 0
>> 0 0
>> generic_getfrm: data are from Dectris
>> generic_getfrm: expected info_array(2)=0 but got 123456789
>>
>> !!! ERROR !!! Unknown image format: ../G7_558_000001.h5
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