Hi,

I agree with Doeke, you are not the first to observe a deviation from 
coplanarity.

In https://doi.org/10.1016/S1074-5521(02)00112-6 you can find the following 
statement:

"Nevertheless, examples have been described of magnesium adopting 
penta-covalent bonding with distorted trigonal bipyramidal geometry [23]."

Reference/Review 23 is about magnesium compounds/constellations in 
crystallography: https://doi.org/10.1016/0022-328X(94)87036-5

A comparison between refined models with and without a coplanar constraint on 
the MgF3- is a first step to try and resolve the issue.

Do not discard the „deviation from coplanarity" possibility a priori

Cheers,

Jeroen
__
Dr. math. et dis. nat. Jeroen R. Mesters
Biological Safety Officer (BBS)
Deputy, Lecturer, Program Coordinator Infection Biology
Visiting Professorship in Biophysics - University South Bohemia

University of Lübeck
Center for Structural and Cell Biology in Medicine
Institute of Biochemistry
Ratzeburger Allee 160
23562 Lübeck

Tel +49 451 3101 3105
https://orcid.org/0000-0001-8532-6699

Am 03.02.2026 um 04:07 schrieb Hekstra, Doeke Romke 
<[email protected]>:

Hi Friday,

Perhaps nature disagrees with you! It may be that that water would like to turn 
this into something more tetrahedral :)

Best, Doeke

From: CCP4 bulletin board <[email protected]<mailto:[email protected]>> 
On Behalf Of Pavel Afonine
Sent: Monday, February 2, 2026 9:44 PM
To: [email protected]<mailto:[email protected]>
Subject: Re: [ccp4bb] MgF3 not coplanar



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