Dear Carlos,
Also PDB-REDO could help.
Best wishes (not only) to Grenoble
Martin
On 17/07/2026 15:50, Pavel Afonine wrote:
Hi All,
along those lines, phenix.find_tls_groups (also in the GUI) available
in Phenix since 2010, the tool splits model into TLS groups fast (up
to a minute). Some notes on underlying method:
https://phenix-online.org/phenixwebsite_static/mainsite/files/presentations/latest/afonine_find_tls_groups.pdf
Pavel
On Fri, Jul 17, 2026 at 7:44 AM John Bacik
<[email protected]> wrote:
Hi Carlos,
If it’s helpful, I have developed a Python-based tool for TLS
segment optimization based on the published TLSMD algorithm. I
have been testing it myself and plan to make it available on
GitHub once I’ve cleaned it up a bit, but I would be happy to
share the current version if you would like to try it.
All the best,
John
On Thursday, July 16, 2026 at 04:10:47 AM CDT, Carlos CONTRERAS
MARTEL <[email protected]> wrote:
Hi
somebody knows if the Ethan Merrit TLS Motion Determination Home
(TLSMD
server) will be back to life on day?
http://skuld.bmsc.washington.edu/~tlsmd/
or if there is a mirror somewhere ?
All the best
Carlos
--
Carlos CONTRERAS MARTEL, Ph.D.
(CRHC CNRS)
[email protected]
"Pneumococcus Group"
Institut de Biologie Structurale
UMR5075 CEA-CNRS-UGA
IBS (PG)
Campus EPN
71, avenue des Martyrs
CS 10090
38044 Grenoble CEDEX 9
FRANCE
tel : (+33) (0)4 57 42 86 41
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