> should trigger an error (warning?) in a compliance checker?

I would say an error.

> Is the file compliant if the two are not the same?

I would say no based on this part: "in those situations where the two values of 
a given property are different, the CRS information cannot be interpreted 
accurately"

> Is a file compliant if the grid mapping parameters are incomplete (when it is 
> possible for them to be complete)?

I would say no based on this part: "the attributes must be the same and grid 
mapping parameters should always be completed as fully as possible"

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