Dear Arnab:

kotoushu used to host 10.4 intel fink debians, but it is no longer available.

Since you are using 10.5, the easiest thing to do is this:


      sudo perl -pi -e  's|kotoushu|sage|g'  /sw/etc/apt/sources.list


if you need further details:  http://tinyurl.com/fink-precompiled


Also make sure you have a recent version of X11.app (ie 2.3.1):

http://xquartz.macosforge.org/trac/wiki

Bill


On Oct 14, 2008, at 7:30 AM, Arnab Bhattacharjee wrote:

Hi Bill,

This is in regard of installing coot in my Mac laptop (leopard, 10.5). I installed the older version of coot via fink. Now I tried to install the latest version directly taking the pre compiled binaries first and then it didn't worked. Then I tried to install it via fink again. But repeatedly its saying

Err http://kotoushu.ucsc.edu unstable/main opensp4-shlibs 1.5.1-1006
Could not connect to kotoushu.ucsc.edu:80 (128.114.150.90). - connect (61 Connection refused)
Err http://kotoushu.ucsc.edu unstable/main opensp4 1.5.1-1006
Could not connect to kotoushu.ucsc.edu:80 (128.114.150.90). - connect (61 Connection refused)
Err http://kotoushu.ucsc.edu unstable/main opensp4-dev 1.5.1-1006
Could not connect to kotoushu.ucsc.edu:80 (128.114.150.90). - connect (61 Connection refused) Err http://kotoushu.ucsc.edu unstable/main sgml-entities-iso8879 1986-4 Could not connect to kotoushu.ucsc.edu:80 (128.114.150.90). - connect (61 Connection refused)
Err http://kotoushu.ucsc.edu unstable/main xft2-dev 2.1.2-5


So can u give me some tips of how to come out of the problem. I actually tried to overwrite the earlier version of coot and hence the older version doesn't work any more. Will be really helpful if u can bail me out of the situation.


Best regards
Arnab

Thanks and Regards
--
ARNAB BHATTACHARJEE

Dept. of Bacteriology and Immunology
SERO Group, Haartman Institute
Haartmaninkatu 3
University of Helsinki
FIN-00014 HELSINKI
Tel. +358-9-191 26385
Fax. +358-9-191 26382


Structural Biology and Biophysics
Macromolecular X-ray Crystallography Group
Institute of Biotechnology.
Biocenter: 3, Viikinkari 1
University of Helsinki
FIN-00790 HELSINKI
Tel. +358-9-191 58922
Fax  +358-9-191 59940





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