Hi Arnab:
Unfortunately, sometimes there are glitches installing some of these
packages that are dependencies, and I'm not up on each of the >100
fink dependencies that coot has.
The best thing is to try a second time, and if that doesn't work, issue
fink describe <packagename>
and it will give you an email address for the package maintainer. Also
there is a fink user's email list with very knowledgeable people on
it, and it is probably the fastest way to get a problem fixed.
Bill
On Oct 15, 2008, at 5:27 PM, Arnab Bhattacharjee wrote:
While installing coot via fink I am repeatedly getting this msg
/sw/bin/dpkg-lockwait -r fink-buildlock-gnome-vfs2-unified-2.20.1-2
(Reading database ... 45318 files and directories currently
installed.)
Removing fink-buildlock-gnome-vfs2-unified-2.20.1-2 ...
Failed: phase compiling: gnome-vfs2-unified-2.20.1-2 failed
i tried to rebuid gnome-vfs2 manually as well by the rebuild and
install command in fink....coudn't do it
Any tips plz?
Thanks and Regards
--
ARNAB BHATTACHARJEE
Dept. of Bacteriology and Immunology
SERO Group, Haartman Institute
Haartmaninkatu 3
University of Helsinki
FIN-00014 HELSINKI
Tel. +358-9-191 26385
Fax. +358-9-191 26382
Structural Biology and Biophysics
Macromolecular X-ray Crystallography Group
Institute of Biotechnology.
Biocenter: 3, Viikinkari 1
University of Helsinki
FIN-00790 HELSINKI
Tel. +358-9-191 58922
Fax +358-9-191 59940
On 14 Oct 2008, at 20:37, William Scott wrote:
Sorry, I just realized that quick-fix won't work.
Instead, edit the file /sw/etc/apt/sources.list
take out the kotoushu lines and put in the three lines shown on
this page:
http://xanana.ucsc.edu/~wgscott/xtal/wiki/index.php/Sources.list_for_10.5_intel_only
i.e.,
deb http://sage.ucsc.edu/fink_intel_10.5_only stable main crypto
deb http://sage.ucsc.edu/fink_intel_10.5_only unstable main crypto
deb http://sage.ucsc.edu/fink_intel_10.5_only local main
Then issue
fink selfupdate-rsync
sudo apt-get update
fink -b update-all
On Oct 14, 2008, at 9:43 AM, William G. Scott wrote:
Dear Arnab:
kotoushu used to host 10.4 intel fink debians, but it is no longer
available.
Since you are using 10.5, the easiest thing to do is this:
sudo perl -pi -e 's|kotoushu|sage|g' /sw/etc/apt/sources.list
if you need further details: http://tinyurl.com/fink-precompiled
Also make sure you have a recent version of X11.app (ie 2.3.1):
http://xquartz.macosforge.org/trac/wiki
Bill
On Oct 14, 2008, at 7:30 AM, Arnab Bhattacharjee wrote:
Hi Bill,
This is in regard of installing coot in my Mac laptop (leopard,
10.5). I installed the older version of coot via fink. Now I
tried to install the latest version directly taking the pre
compiled binaries first and then it didn't worked. Then I tried
to install it via fink again. But repeatedly its saying
Err http://kotoushu.ucsc.edu unstable/main opensp4-shlibs
1.5.1-1006
Could not connect to kotoushu.ucsc.edu:80 (128.114.150.90). -
connect (61 Connection refused)
Err http://kotoushu.ucsc.edu unstable/main opensp4 1.5.1-1006
Could not connect to kotoushu.ucsc.edu:80 (128.114.150.90). -
connect (61 Connection refused)
Err http://kotoushu.ucsc.edu unstable/main opensp4-dev 1.5.1-1006
Could not connect to kotoushu.ucsc.edu:80 (128.114.150.90). -
connect (61 Connection refused)
Err http://kotoushu.ucsc.edu unstable/main sgml-entities-iso8879
1986-4
Could not connect to kotoushu.ucsc.edu:80 (128.114.150.90). -
connect (61 Connection refused)
Err http://kotoushu.ucsc.edu unstable/main xft2-dev 2.1.2-5
So can u give me some tips of how to come out of the problem. I
actually tried to overwrite the earlier version of coot and hence
the older version doesn't work any more. Will be really helpful
if u can bail me out of the situation.
Best regards
Arnab
Thanks and Regards
--
ARNAB BHATTACHARJEE
Dept. of Bacteriology and Immunology
SERO Group, Haartman Institute
Haartmaninkatu 3
University of Helsinki
FIN-00014 HELSINKI
Tel. +358-9-191 26385
Fax. +358-9-191 26382
Structural Biology and Biophysics
Macromolecular X-ray Crystallography Group
Institute of Biotechnology.
Biocenter: 3, Viikinkari 1
University of Helsinki
FIN-00790 HELSINKI
Tel. +358-9-191 58922
Fax +358-9-191 59940
