Perfect! I thought so but couldn't seem to figure out how to get it to go. Kept using the wrong kind of arguments! ______________________________________________________________________________________ Joseph P. Noel, Ph.D. Arthur and Julie Woodrow Chair Investigator, Howard Hughes Medical Institute Professor, The Jack H. Skirball Center for Chemical Biology and Proteomics The Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla, CA 92037 USA
Phone: (858) 453-4100 extension 1442 Cell: (858) 349-4700 Fax: (858) 597-0855 E-mail: [email protected] Publications & Citations: http://scholar.google.com/citations?user=xiL1lscAAAAJ Homepage Salk: http://www.salk.edu/faculty/noel.html Homepage HHMI: http://hhmi.org/research/investigators/noel.html ______________________________________________________________________________________ On Feb 6, 2014, at 12:20 AM, Bernhard Lohkamp <[email protected]> wrote: > > You can by using an extra argument (True or #t to get the animation) > > fit_waters(imol, True) > > or > > (fit-waters imol #t) > > Bernhard > >> Dear Joe, >> >> We'll need info from the experts, but as far as I'm aware it's not >> possible to get the animation. >> >> Venlig hilsen/best regards >> Folmer Fredslund >> >> On Feb 5, 2014 7:05 PM, "Joseph Noel" <[email protected] >> <mailto:[email protected]>> wrote: >> >> Dear Folmer! >> >> Thanks! That is the one I am familiar with but wasn't sure how I >> could animate it like for the protein. I guess maybe its not possible. >> >> Best- >> >> Joe >> >> ______________________________________________________________________________________ >> Joseph P. Noel, Ph.D. >> Arthur and Julie Woodrow Chair >> Investigator, Howard Hughes Medical Institute >> Professor, The Jack H. Skirball Center for Chemical Biology and >> Proteomics >> The Salk Institute for Biological Studies >> 10010 North Torrey Pines Road >> La Jolla, CA 92037 USA >> >> Phone: (858) 453-4100 extension 1442 >> <tel:%28858%29%20453-4100%20extension%201442> >> Cell: (858) 349-4700 <tel:%28858%29%20349-4700> >> Fax: (858) 597-0855 <tel:%28858%29%20597-0855> >> E-mail: [email protected] <mailto:[email protected]> >> >> Publications & Citations: >> http://scholar.google.com/citations?user=xiL1lscAAAAJ >> >> Homepage Salk: http://www.salk.edu/faculty/noel.html >> Homepage HHMI: http://hhmi.org/research/investigators/noel.html >> >> ______________________________________________________________________________________ >> >> On Feb 4, 2014, at 10:15 PM, Folmer Fredslund <[email protected] >> <mailto:[email protected]>> wrote: >> >>> Dear Joseph, >>> >>> Yes, it's possible, but not you don't get any real time updates >>> like you do for the protein. >>> >>> Here's a link to the fine manual: >>> >>> http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/docs/coot.html#Refine-All-Waters >>> >>> Venlig hilsen >>> Folmer Fredslund >>> >>> On Feb 5, 2014 12:05 AM, "Joseph Noel" <[email protected] >>> <mailto:[email protected]>> wrote: >>> >>> Is there a way in COOT to automate the real space refine of >>> waters - something equivalent to the Extension, All Molecule, >>> Fit Protein? >>> >>> ______________________________________________________________________________________ >>> Joseph P. Noel, Ph.D. >>> Arthur and Julie Woodrow Chair >>> Investigator, Howard Hughes Medical Institute >>> Professor, The Jack H. Skirball Center for Chemical Biology >>> and Proteomics >>> The Salk Institute for Biological Studies >>> 10010 North Torrey Pines Road >>> La Jolla, CA 92037 USA >>> >>> Phone: (858) 453-4100 extension 1442 >>> <tel:%28858%29%20453-4100%20extension%201442> >>> Cell: (858) 349-4700 <tel:%28858%29%20349-4700> >>> Fax: (858) 597-0855 <tel:%28858%29%20597-0855> >>> E-mail: [email protected] <mailto:[email protected]> >>> >>> Publications & Citations: >>> http://scholar.google.com/citations?user=xiL1lscAAAAJ >>> >>> Homepage Salk: http://www.salk.edu/faculty/noel.html >>> Homepage HHMI: http://hhmi.org/research/investigators/noel.html >>> >>> ______________________________________________________________________________________ >>> >> > > > -- > *************************************************** > > Dr. Bernhard Lohkamp > Associate Professor/Docent > Div. Molecular Structural Biology > Dept. of Medical Biochemistry and Biophysics (MBB) > Karolinska Institutet > S-17177 Stockholm > Sweden > > phone: (+46) 08-52487651 > fax: (+46) 08-327626 > email: [email protected] >
