Sorry, didnt see this earlier... catching up with a massive backlog on
emails.
I dont have any solution to your loggraph problem, but Coot should
certainly allow (by default and if available) the use of qtrview. I put
this on my list to do (somewhere on the top ;-) ).
B
On 05/04/2014 15:04, hari jayaram wrote:
Hi all,
I like running my refmac from inside coot and having the loggraph blt
graphs popup on completion.
loggraph graph pop ups seem broken on 64 bit redhat enterprise running
ccp4 6.3 and ccp4 6.4 , both 64 bit versions. The window for the graph
pops up and then crashes with an error complaining of the loggraph.tcl
script( see below).
This script nor associated scripts have not changed in ccp4 for a while,
and everything works on 64 bit Ubuntu, so I am scared the error may like
with some redhat component.
I tried to compile a "native" blt instead of using the ccp4 supplied one
to see if that fixed things. Digging through the blt forums etc it seems
that many are abandoning blt to something like a replacement called
wize. Also judging from the forums several things in the blt 2.4 and
older seem to have issues with newer tk flavors like 8.5.
Regardless , given all this , are there any ways to auto popup the new
style qt based graphs when running refmac from within coot upon completion.
Sorry I am cross posting to coot, ccp4bb.
thanks for your help in advance.
hari
the error I see in refmac : view log graphs OR in coot on refmac
completion says:
"Error in startup script: syntax error in expression "10 11 12 + 12":
extra tokens at end of expression
while executing
"expr [string trim $ele] + $data(NCOLUMNS) "
(procedure "extract_tables_from_GRAPH" line 44)
invoked from within
"extract_tables_from_$filetype $input $arrayname"
(procedure "extract_tables_from_file" line 31)
invoked from within
"extract_tables_from_file $system(SCRIPT) $system(FORMAT) data"
invoked from within
"if { $system(SCRIPT) != "" } {
if { ![ElementExists system FORMAT] || $system(FORMAT) == "" } {
set system(FORMAT) [GetFileFormat $system(SCRI..."
(file
"/home/yong.tang/ccp4_root/ccp4-6.4.0/share/ccp4i/loggraph/loggraph.tcl"
line 2324)
invoked from within
"source [file join $env(CCP4I_TOP) loggraph loggraph.tcl]"
(file
"/home/yong.tang/ccp4_root/ccp4-6.4.0/share/ccp4i/bin/loggraph.tcl" line 83)
"
--
***************************************************
Dr. Bernhard Lohkamp
Associate Professor/Docent
Div. Molecular Structural Biology
Dept. of Medical Biochemistry and Biophysics (MBB)
Karolinska Institutet
S-17177 Stockholm
Sweden
phone: (+46) 08-52487651
fax: (+46) 08-327626
email: [email protected]
