Thanks a lot Bernhard. I could not get this to work on Redhat Enterprise 6.5 and have switched to not running refmac from inside coot as a stop gap. It will be great to have the qt output option directly from inside coot..I will gladly pull from svn and test it out.
Thanks a tonne Hari On Wed, Apr 23, 2014 at 1:54 AM, Bernhard Lohkamp <[email protected]>wrote: > > Sorry, didnt see this earlier... catching up with a massive backlog on > emails. > I dont have any solution to your loggraph problem, but Coot should > certainly allow (by default and if available) the use of qtrview. I put > this on my list to do (somewhere on the top ;-) ). > > B > > > On 05/04/2014 15:04, hari jayaram wrote: > >> Hi all, >> I like running my refmac from inside coot and having the loggraph blt >> graphs popup on completion. >> loggraph graph pop ups seem broken on 64 bit redhat enterprise running >> ccp4 6.3 and ccp4 6.4 , both 64 bit versions. The window for the graph >> pops up and then crashes with an error complaining of the loggraph.tcl >> script( see below). >> >> This script nor associated scripts have not changed in ccp4 for a while, >> and everything works on 64 bit Ubuntu, so I am scared the error may like >> with some redhat component. >> I tried to compile a "native" blt instead of using the ccp4 supplied one >> to see if that fixed things. Digging through the blt forums etc it seems >> that many are abandoning blt to something like a replacement called >> wize. Also judging from the forums several things in the blt 2.4 and >> older seem to have issues with newer tk flavors like 8.5. >> >> Regardless , given all this , are there any ways to auto popup the new >> style qt based graphs when running refmac from within coot upon >> completion. >> >> Sorry I am cross posting to coot, ccp4bb. >> >> thanks for your help in advance. >> hari >> >> the error I see in refmac : view log graphs OR in coot on refmac >> completion says: >> >> "Error in startup script: syntax error in expression "10 11 12 + 12": >> extra tokens at end of expression >> while executing >> "expr [string trim $ele] + $data(NCOLUMNS) " >> (procedure "extract_tables_from_GRAPH" line 44) >> invoked from within >> "extract_tables_from_$filetype $input $arrayname" >> (procedure "extract_tables_from_file" line 31) >> invoked from within >> "extract_tables_from_file $system(SCRIPT) $system(FORMAT) data" >> invoked from within >> "if { $system(SCRIPT) != "" } { >> if { ![ElementExists system FORMAT] || $system(FORMAT) == "" } { >> set system(FORMAT) [GetFileFormat $system(SCRI..." >> (file >> "/home/yong.tang/ccp4_root/ccp4-6.4.0/share/ccp4i/loggraph/loggraph.tcl" >> line 2324) >> invoked from within >> "source [file join $env(CCP4I_TOP) loggraph loggraph.tcl]" >> (file >> "/home/yong.tang/ccp4_root/ccp4-6.4.0/share/ccp4i/bin/loggraph.tcl" line >> 83) >> " >> >> >> > -- > *************************************************** > > Dr. Bernhard Lohkamp > Associate Professor/Docent > Div. Molecular Structural Biology > Dept. of Medical Biochemistry and Biophysics (MBB) > Karolinska Institutet > S-17177 Stockholm > Sweden > > phone: (+46) 08-52487651 > fax: (+46) 08-327626 > email: [email protected] >
