>......and clipped around the fragment I wanted and it is fine. ...and realizing the risk and temptations that come with it. ;-)
Cheers, BR -----Original Message----- From: Mailing list for users of COOT Crystallographic Software [mailto:[email protected]] On Behalf Of PC Sent: Tuesday, August 19, 2014 9:41 AM To: [email protected] Subject: Re: ccp4 QTMG Hi Jon and Bernhard, Thank you-yes, I now opened with QTMG and clipped around the fragment I wanted and it is fine. Patrick > -----Original Message----- > From: [email protected] > Sent: Tue, 19 Aug 2014 18:37:35 +0200 > To: [email protected] > Subject: Re: ccp4 QTMG > > Hi, > > this looks odd. I am not entirely sure I follow how you produced and > imported the map and what you figure shows. Anyway, the maps exported > from Coot are written for one asymmetric unit which will (should) be > expanded by symmetry in Coot and MG. In case you have a map not > restricted to an asu this will not work (and you only see one map). I > assume you are not centred on the ligand, so MG (and Coot as well) > shows you the map parts in the different asus (clipped around the centre). > Centred on the ligand everything should be in one place. > > Not necessarily a direct solution to this problem, but why dont you > open you map from the mtz in MG and show (clip) only the map around > the ligand. > > B > > On 19/08/2014 18:13, PC wrote: >> Hi, >> >> I used COOT mask map by atom selection and cut out a fragment of the >> map, then exported it and now I tried to open it in QTMG. >> >> It displays it as a unit cell, I want one for a presentation, how >> can I combine it to display one image ? >> >> Thank you, >> Patrick >> --------------------------------------------------------------------- >> --- 3D Earth Screensaver Preview <http://www.inbox.com/earth> *Free >> 3D Earth Screensaver* Watch the Earth right on your desktop! Check it >> out at www.inbox.com/earth <http://www.inbox.com/earth> >> --------------------------------------------------------------------- >> --- 3D Earth Screensaver Preview <http://www.inbox.com/earth> *Free >> 3D Earth Screensaver* Watch the Earth right on your desktop! Check it >> out at www.inbox.com/earth <http://www.inbox.com/earth> > > -- > *************************************************** > > Dr. Bernhard Lohkamp > Associate Professor/Docent > Div. Molecular Structural Biology > Dept. of Medical Biochemistry and Biophysics (MBB) Karolinska > Institutet > S-17177 Stockholm > Sweden > > phone: (+46) 08-52487651 > fax: (+46) 08-327626 > email: [email protected] > > --- > This email is free from viruses and malware because avast! Antivirus > protection is active. > http://www.avast.com ____________________________________________________________ FREE 3D EARTH SCREENSAVER - Watch the Earth right on your desktop! Check it out at http://www.inbox.com/earth
