On 01/10/14 16:32, Doeke Hekstra wrote:
As a novice to making electron density difference maps, I am curious about the 
algorithm underlying the “make a difference map” option in Coot. My impression 
is that the subtraction occurs in real space rather than at the level of 
structure factors.

Yes.
Given the remark in the Coot manual that this can be done regardless of 
differences in grid parameters I would assume Coot interpolates to a finer 
underlying grid.

Yes.

Are my inferences correct?

Yes.

A real-space subtraction would be quite interesting, since I am comparing data 
sets that are/can be processed in different space groups.

That was the plan.

Paul.

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