Hi Dorothy,
this dashed lines represent links. You can delete them in PDB-file, look
for keywords LINK and LINKER. In coot you can create them via tool in menu.
However its creation after Real Space Refinemnet or Regularize zone
looks to me as a bug.
Jan
On 11/04/2014 01:16 PM, ly wrote:
Dear Eleanor,
Thank you for your advice.
I have tried it, but it didn't work.
Also the dash line shown by the function in environmental distance is
different from the lines in my display.
Dorothy
At 2014-11-04 17:50:40, "Eleanor Dodson" <[email protected]>
wrote:
Check under Measures - are you showing environmental distances, or
did you ask for a distance to be displayed - there is an option
there - clear all distances.
Eleanor
On 4 November 2014 04:55, ly <[email protected]
<mailto:[email protected]>> wrote:
Hi,
I just encountered a problem during handling the residue fit:
after using the program "real space refine zone " and
"regularize zone", the residue cys 434 and his 435 have fit
the map, but two dash lines were formed between the Carbonyl O
and C in cys 434 and Carbonyl O in his 435, I change the
position and orientation
of the residue, even mutate the residue, delete it and create
it again. However, the two dash lines still can't be
removed.The picture show this problem in the picture in
attachment.
I hope anyone to give me some advice and suggestion to solve
the problem, I would
appreciate hearing them.
Thank you!,
Dorothy
--
Jan Stransky, PhD student
Institute of Biotechnology, AS CR
Laboratory of structure and function of biomolecules
Nad Safinou II 366
Vestec
Czech Republic
Tel.: +420226201570
