Hi all, two suggestions for your consideration that I think might be useful in a future version of Coot:
1. It would be great to have a representation mode in between all atoms and C-alphas. Specifically, I would love to have a "backbone" mode, where only the protein backbone (to CB) or ribose-phosphate backbone of nucleic acids would be visible. This would help when fixing up backbone geometry in large, low resolution structures by removing the visual clutter of the sidechains/bases, while still being able to recognize flipped peptides or mispaired beta strands. 2. Kind of in the same vein, I wonder whether in the "traffic lights" dialogue that pops up after real space refinement, it might be worth altering the "Ramachandran" section such that rather than having a raw score, it also lists the ramachandran outliers in the refined selection, so one can easily pick them out and fix them up on the fly. Best, Oliver.
