You can already click on residue symbols in Coot's Ramachandran, which
will focus you on that residue... A table you can get from Molprobity
webservice, but it is not clickable though...
Cheers,
Jan
On 05/25/2015 06:22 PM, Shane Caldwell wrote:
If I might add as well to Oliver's suggestions, an option to jump to
questionable/bad ramachandrans would be useful at the validation
stage. A list like the residues with missing atoms / residues with alt
confs functions would be a quick way to inspect these without having
to track them down in a busy 2d plot.
Shane Caldwell
McGill University
On Mon, May 25, 2015 at 11:05 AM, Oliver Clarke <[email protected]
<mailto:[email protected]>> wrote:
Also along the same lines, I would love to see a "local
ramachandran" - a ramachandran plot, but only displaying those
residues within a certain distance from the center of rotation,
say 20 Å. The ramachandran plot is very handy for validation and
identification of troublesome regions, but it gets very crowded
for large, multi chain structures, and I feel like this would be a
handy aid during refinement.
Cheers,
Oliver.
--
Jan Stransky, PhD student
Institute of Biotechnology, CAS
Laboratory of structure and function of biomolecules
Nad Safinou II 366
Vestec
Czech Republic
Tel.: +420226201570
